BAC Information

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BAC

Clone NameMSMg01-061E09
Chromosome6 (Build37)
Map Location 104,164,819 - 104,165,303
singlet/doubletsinglet
Overlap genenone
Upstream geneChl1, LOC666141, LOC100043345
Downstream geneCntn6, LOC384470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061E09.T7 (MSMg01no061_e09.b1)MSMg01-061E09.TJ (MSMg01no061_e09.g1)
ACCAG287521AG287522
length720757
length of high quality
(start - end)
511 (43 - 553)---
definitionCHROMAT_FILE: MSMg01no061_e09.b1 PHD_FILE: MSMg01no061_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:12 2005CHROMAT_FILE: MSMg01no061_e09.g1 PHD_FILE: MSMg01no061_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATT
CCTTGAGGTTCTCCAAACTCTCTCACCCATAAAGGCCCATTCATCAAAAA
CACTTTCTGTGTGTTATTATGATAGTTGTCAACTTGGTCATCTTTTTGAG
AGTCTTACATGCCATATACAATAGAAAGTGTTTTCTAGATAGATCCATGG
AAACATTTATATCAAAGGACAAAGGGCACTTTCTAAGCTTTATCTGATAT
TACTCTCTCATCTATAGCAGGCACTTTATACTTAACAGTAATGAGTATAA
ACTCCCATTAACCCTTAGTAATAAAGTGGAAGTAATCCTTCCTGAAAAAA
AAAAAAAAAAAAAACCAAACAAACAAAAAAAAAAAACTTGAGCTTCCAGC
TTCCCAGAATATCCTCTTCCACGCAAATTGTTTCCCTTTAACAAGTAAAT
GAAAGAATATAACTGCTGTATGGTGGTTTCAAAAAGCTTGGCCTAGGGCG
TGGCATTGTTAGGAGGTGTGGCTTTATTGGAGGAGGGGTGGCCTTGTTGG
AGAAAGTTTGTCACTGAGAGGGTGGACTTTGTGAGACCCTCCTCCTAAAC
TAAAAGACAGAGTTCTTTTATTTCCCTTTGGAAGAACTCTCAACTTCTTG
AGCACCATGCTGCCTCGATGCTGTCATGCTTCATTCCTGGATGCAACTAA
ACTGAACATCTAAACCCTGT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATGACATCTTATGATACTTATTACTTAAGG
ATTTGACCCGGCTTTTTTCCTACGAACTTGACGACATATTCATTTTTAGT
GTCTTTTACAGAGCTATCGTGATTTTTTTTTAGTATGGAGACCATTCTAA
TACTGTTCTCGCGCACTTGGCCTTTGGTCTGTGAGTTCTACAAGCCCTCA
TTCCTTTTGGCAAGATAGCCGTTTTTACACGTGTCGAACCTGTCTCTGCA
TGAGAATGGGCGACCTTTCGATCTTCTGAGAGCGACTTTCATTACTTGCT
TCTGAGACTTGAACGTTATATCATACGGAGCATTACCGACCTTAATGAGA
GTCACACTCCGAGATTTTAACCAATTTGAGACCATGGACGAATATGATGG
TAATGCAAGATCTATCTCAGCAAGATTATACATGATGATGTACAAGGACA
TTGACTAGATTACATATAGTATATGATATATAACATACTAGATTATGCAT
TTACCCGTTTTCCTATTATTATGTAGTAATTTTTGAGATGATAATAATTG
CAAGGGTTTACCTTAAGATCAGCGCNTGGAAGGGATGGTTTTCATAATAT
GGTTTGGAAGTTCCCAGAGGGGGTCTATAGTTCTATGCCTGAGGTCCCTC
TATAAATCCAAACTTTTTCTCCTGCCATAAGGGGGCTCTACGAGTATTTT
ATAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_e09.b1 MSMg01no061_e09.b1 CHROMAT_FILE:
MSMg01no061_e09.b1 PHD_FILE: MSMg01no061_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:12 2005
         (511 letters)



>mm_chr6_104164801_104165712
          Length = 912

 Score =  810 bits (419), Expect = 0.0
 Identities = 475/511 (92%), Gaps = 29/511 (5%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattccttgaggt---tctccaaactctctcacccataaaggcccattcatcaaaaaca 60
           ||||||||||||||   | |  ||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaattccttgaggtacattt--aaactctctcacccataaaggcccattcatcaaaaaca 446

                                                                       
Query: 61  ctttctgtgtgttattatgatagttgtcaacttggtcatctttttgagagtcttacatgc 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctttctgtgtgttatcatgatagttgtcaacttggtcatctttttgagagtcttacatgc 386

                                                                       
Query: 121 catatacaatagaaagtgttttctagatagatccatggaaacatttatatcaaaggacaa 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catatacaatggaaagtgttttctagatagatccatggaaacatttatatcaaaggacaa 326

                                                                       
Query: 181 agggcactttctaagctttatctgatattactctctcatctatagcaggcactttatact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agggcactttctaagctttatctgatattactctctcatctatagcaggcactttatact 266

                                                                       
Query: 241 taacagtaatgagtataaactcccattaacccttagtaataaagtggaagtaatccttcc 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 taacagtaatgagtataaactcccattaacccttagtaagaaagtggaagtaatccttcc 206

                                                                       
Query: 301 tgaaaaaaaaaaaaaaaaaaaaccaaacaaacaaaaaaaaaaaacttgagcttccagctt 360
           ||||||||                        ||||||||||||||||||||||||||||
Sbjct: 205 tgaaaaaa------------------------aaaaaaaaaaaacttgagcttccagctt 170

                                                                       
Query: 361 cccagaatatcctcttccacgcaaattgtttccctttaacaagtaaatgaaagaatataa 420
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 cccagaatatcctcttctatgcaaattgtttccctttaacaagtaaatgaaagaatataa 110

                                                                       
Query: 421 ctgctgtatggtggtttcaaaaagcttggcctagggcgtggcattgttaggaggtgtggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 ctgctgtatggtggtttcaaaaagcttggcctagggcgtggcattgttaggaggtgtggc 50

                                          
Query: 481 tttattggaggaggggtggccttgttggaga 511
           |||||||||||||| ||||||||||||||||
Sbjct: 49  tttattggaggaggtgtggccttgttggaga 19


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 912
Length adjustment: 10
Effective length of query: 501
Effective length of database: 902
Effective search space:   451902
Effective search space used:   451902
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)