BAC Information

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BAC

Clone NameMSMg01-061K13
Chromosome6 (Build37)
Map Location 72,508,153 - 72,508,521
singlet/doubletsinglet
Overlap geneCapg
Upstream geneVps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6
Downstream geneRbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1, Tmsb10, Dnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061K13.T7 (MSMg01no061_k13.b1)MSMg01-061K13.TJ (MSMg01no061_k13.g1)
ACCAG287817AG287818
length729784
length of high quality
(start - end)
372 (44 - 415)59 (66 - 124)
definitionCHROMAT_FILE: MSMg01no061_k13.b1 PHD_FILE: MSMg01no061_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:42 2005CHROMAT_FILE: MSMg01no061_k13.g1 PHD_FILE: MSMg01no061_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAATCCGCGGAATT
CCACTTTACAAGTACCTGCACCGGTTCAAATCAAGACAATCTTAGAATTA
GCATCTGACCTTCACCAGGGGCTGGAAGTGAATACCATTCTCCTTCTCAG
AGGGCGTCCTTCCCACCATCTCTCCTCCAGTCCCCACAAACCTACCTGAG
CCCTGGCCCAGCCTTCCCACAGCCTCTTCCCTTCAGCTCTGTACCCTGGC
CACCTGCTGATGCTCTGTGCAGGATCTCACACCAGGCCAATCCCCAGCAG
GCCTGCAGTGCCTACCTTATACAGGGCTGCGGACTGGGCGTTGGTCTGGA
CAGCTGTAATGTCTTCCTCGGGGTTGCCCTCCTTCAGAGCAGGCTTGGGG
CCCAGAATCTGAAGGTCCACCCACGATTACTGGGGCTTCTGCACCCCAAT
TTTCTAAGTCACCACATGCAGGGTCACCTGTGTTCTGCACTGGTAAAAGC
AATGGGTCCAGTCCACCTACCCGATAGCCTCTTGCCCTGAGAACACATCC
CCAGAATACAAAGGTACCCCATGAGTTAGGGCTGAGTAGGAACCCAGATA
CCCCCTTTCCTGACAATCCTCTGTCAGCCATCTCTCTTGCTCCCCAGCTT
ATCGTTGCTTCTCCTGACCCCATCCCAACATTTCCTCCCAGTTGTCCTCC
TCCAGATCCCTTTCCTGAATTATTTTCGN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCATTCACCCCCTTCTATTCCTACTGTTTATCAGGGCA
CAGCTAGAATGTTGATATCTCAGTGTGGGGGCGTTGGGGTGGGGTAGAGG
ACATTTCTTAATTTTCCTCTTTTTTCCTTTTTTCCCTCTTTCTTCTTCTC
TCCTTCCTTTCCCTTTTTCTCTCCCCCCCTTCCTTACCTCCCTTTCTTCC
CTTTTTCCTTTTCTTCTTTCCCCTTTCCCTCCCCTTTTTTTTTCTTTTTT
TTCCTTCTTTCCCCTTCCCCCTTTTTTCCCTTATTCCAACCACCCCCATT
CTTTTTTTCAATTTTCACCACCCCTCCCCCCCCTTTTTTTCCCCCCCTTT
TTTTTCCTCTTTTTTCCCCCCCCCCCCTCTTTTTTTATCTCCCCCCCCTC
TTCTCCTTTCTTTTCCCTTTTTTTTTTTCTTTTCTCTTTTTCCTTCTTCT
TCCCCTTTTCTTTTTCCCCTTTTTTCTCCCTTTTTTTTTTTTTATCCCCC
ACTTTTTCTTCCTCCTTCTCCCTTTTCTCCTTTATTTCTCCCCTTCCCTC
CCCTCTTTTTTTTCTCCCTCCTCTCCCTTCCTATTTCTTTTCCTTCCTTT
TCATTTTCTCTTCCTTTCCCCTTTTCTCTTATTCCCTCCCACACCTCTTT
TTTCTCCTTCTCCCACTTATCCCGCACATTACTTTTTCTCTTCTTCCTTA
TTTTTTTCTCTCCCCCTTTTTTCTCTTATTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_k13.b1 MSMg01no061_k13.b1 CHROMAT_FILE:
MSMg01no061_k13.b1 PHD_FILE: MSMg01no061_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:42 2005
         (372 letters)



>mm_chr6_72507951_72508722
          Length = 772

 Score =  644 bits (333), Expect = 0.0
 Identities = 360/369 (97%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattccactttacaagtacctgcaccggttcaaatcaagacaatcttagaattagcatc 62
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gaattccactttacaagtaactgcaccggttcaaatcaagacaatcttagaattagcatc 512

                                                                       
Query: 63  tgaccttcaccaggggctggaagtgaataccattctccttctcagagggcgtccttccca 122
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 511 tgaccttcaccaggggctggaagtgaataccattctctttctcagagggcgtccttccca 452

                                                                       
Query: 123 ccatctctcctccagtccccacaaacctacctgagccctggcccagccttcccacagcct 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ccatctctcctccagtccccacaaacctacctgagccctggcccagccttcccacagcct 392

                                                                       
Query: 183 cttcccttcagctctgtaccctggccacctgctgatgctctgtgcaggatctcacaccag 242
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 391 cttcccttcagctctgtaccctggccacctgcagatgctctgtgcaggatctcacaccag 332

                                                                       
Query: 243 gccaatccccagcaggcctgcagtgcctaccttatacagggctgcggactgggcgttggt 302
           |||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||
Sbjct: 331 gccaatccccagcaggcctgtagtgcctaccttatacagggctgcagcctgggcgttggt 272

                                                                       
Query: 303 ctggacagctgtaatgtcttcctcggggttgccctccttcagagcaggcttggggcccag 362
           |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 271 ctggtcagctgtaatgtcttcctcggggttaccctccttcagagcaggcttggggcccag 212

                    
Query: 363 aatctgaag 371
           || ||||||
Sbjct: 211 aacctgaag 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)