BAC Information

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BAC

Clone NameMSMg01-062A21
Chromosome6 (Build37)
Map Location 139,798,452 - 139,799,224
singlet/doubletsinglet
Overlap genePik3c2g
Upstream geneEG668196, EG632971, LOC100043898
Downstream genePlcz1, Capza3, LOC100042680, LOC100039020, LOC269810, Plekha5, Aebp2, EG664868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062A21.T7 (MSMg01no062_a21.b1)MSMg01-062A21.TJ (MSMg01no062_a21.g1)
ACCAG288119AG288120
length1,1381,200
length of high quality
(start - end)		776 (87 - 862)640 (78 - 717)
definitionCHROMAT_FILE: MSMg01no062_a21.b1 PHD_FILE: MSMg01no062_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:15 2005CHROMAT_FILE: MSMg01no062_a21.g1 PHD_FILE: MSMg01no062_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCAATTCTTTTNNNNACCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCAATTCATGGGNGCTTCTTTTGAAGGATGCCCAGTG
AAAAGAAGAAGAAAAAGTGGTCGAGAATGGGGTTAGATACTTTCTATTCT
CCTTGAATCTTTTCTGCCCTCATAGTTGCACCCCCTGTTCGCACATACAG
AGTATTTATTAAAAGTCATGTCAAAATATCCTATAATTAACAACTACTAT
GTGCAAACCATTATCTAGATGCTACCAGAAAGGAATGCTGCACCTAGTTA
ATATGTCAATGAAAATTGGCGTGAAAGTATATACCTATGCATTAAATGGA
AAATACACAAAGGAATTCATCACAGTTGAATGAAGCAGCATCTGAAGAAT
AAAGTCATTTAGAGGTGAACTAGATCTTGAAGGTTCTGAGAGACAAGCGT
ATTCAAAAATAGGCAGAGGAAGCGTTTCCTGGGTGGGGAAAGTCAAAAAA
CAACTTAAAAACTGAAGTCTAAAAGGTGGATTACAAAGGTCAGATCCAGG
GGGCAGGAAAGACCGAATCAAAGTCTTGTAGATGACTTTATGTTTGGTAA
AATGGAAAAGCTACAAAGGACAAGGGAAGATAGAAGGCAAAAGAAAAAAA
TGGATGACCTCTGACCTTGACCAGCAGAGATTATTGACTCAGATATAAAA
ATAGAAGGAAAAAAAAAACCTGTCAGTAAATAAAATGTCCGATGCTTGCT
TTTCCATCCAAAGAGATAGAAGCACTAAGTGACTCTCAGCTTCTTCAGCT
GGTCATACCTCAGCAACTCAAAGAGATTTCTCAAAAGAATTGCAAAATTA
ATAGTTCCCTGGGTGGGTTGACAATTTTTTTATTTTATTTATTTGGCTAT
TCATTTATTTTTGGAAAGAAAGCACAACTCAAGCCTAAAAACCTTTTCTT
TCTGCGTCTGGAAAGCAATGCTTTATTAAATAAATTGGGGGGAGGCCCGA
AATTTTTTTCCCTTCCCAAAAAACACCAAACTGGAGGAACTTTTTTCCCT
TTTTTTGAAGGGCCTCCAAAAATCCTGGGGCCTTTTGATTTCTCAAAAAA
ACCCCCCCCCGGGTCAACCTTGTTAAGGGGTTTTTTTA

NCCGCTCCTTTTTTAAAGATGGNAGGCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTATACATGCCCACTTATGCT
TCTATAACTCTTCCTATAACCATCCCTTTCAGGACCCATTATTAATTTTA
TCCTTTCCTTTTCTGTTTTATAAATACATCTAGTCCAATCTGTGCTGTGC
ACATACTGCCTGGTATCAGCCATCCACTGATGGGTGGTCAACCTACCTGG
GTCTTCACCCTTAAAGAAAACCAACATCCCTTCTCCCAGGAGCTATAGAG
TACCAATGGCGATTAGACTCATGGAGGGGCTCCATGCTTGTCTCCCTTCT
ATGAGCTGGGGCTCGTGTCTGACATGAACGTATGTATGTCTGTCCCAGCT
GCTGACCTCATGTGTGCATCTCTCCTGCTGTATCCAGAAAAGCTTTCTTG
GTGTCATCTATCACCTCTGACTCTTTCATCAGTCCGTCTTACAGGTTGTG
TGTGCGCGTGTGTGTGTGTGTGTGTGTATGTGTATGTGCCTGTGTGTGTG
TGTCTGTGTGTGTGCCTGTGTGTGTGTCTGTGTGTGTGTGCCTGTATGTG
TGCCTTCGTGTGTATGTGTGTGTGCCTGTGTGTGTGTCTGTGTATGTGTG
TCTGTGTGTGTGTGAGCCTGTGTGTGTGCCTGTGTGTGTGTGTGCCTGTG
TGTGTGTCTGTGTGTTCGTGCTCCTGTGTGTGTGCCTGTGTGCTGTGTGT
CCCTGTGTGTGTTGTTTGTTTTTTTTTTCCCGTTTTTGCTTCTTTTTCCT
CTTTTCTCTTTTCTTTTCCCTTCTTTCTTTTCTTCCCCCCCTTTTTTTCT
CTTCTTTTTTCTTTCTCTTCTCTCTCTTTTCTTCCCCTCTCCTTTCCTTT
TTCCTCTCTCTTCTTCTTCTTTCCTCTTTTTTTTTCTCCTTTTTCTTTCT
TCTTCCTCTTTTTTTTTTCTCCCCCTCCCTTTCTTTTTTTTCCTTTTCTT
TCTTTCTTTCTTCCTTTTTTTTCTCCCTTTTCTTCTTCTTTTCCTCCTCT
TTTCTTCTCTCTTCTCCTCTTTTCTTCTCTTCTCTCTTCCTTCTTTTTTT
CTCTTCTTTCCCTCTTCTTTCTCCCTTCTTTCTTTTTCCTCTTTCTCTTC
TCCTTTTCTCCTCCCTCTCTTCTTTTCTTCCCTCCTCTTCTTCTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_a21.b1 MSMg01no062_a21.b1 CHROMAT_FILE:
MSMg01no062_a21.b1 PHD_FILE: MSMg01no062_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:15 2005
         (776 letters)



>mm_chr6_139798252_139799424
          Length = 1173

 Score = 1350 bits (698), Expect = 0.0
 Identities = 757/778 (97%), Gaps = 7/778 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggatgcccagtgaaaagaagaagaaaaagtgg-tcgagaa-tggggttagatactttc 58
           |||||||||| |||||   ||||||||||||||| | ||||| | |||||||| ||||||
Sbjct: 973 aaggatgcccggtgaa---aagaagaaaaagtggct-gagaact-gggttagacactttc 919

                                                                       
Query: 59  tattctccttgaatcttttctgccctcatagttgcaccccctgttcgcacatacagagta 118
           |||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 918 tattctccttgaatattttctgccctcatagttgcatcccctgtttgcacatacagagta 859

                                                                       
Query: 119 tttattaaaagtcatgtcaaaatatcctataattaacaactactatgtgcaaaccattat 178
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 858 tttattaaaagtcatgtcaaaatatcctattattaacaactactatgtgcaaaccattat 799

                                                                       
Query: 179 ctagatgctaccagaaaggaatgctgcacctagttaatatgtcaatgaaaattggcgtga 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ctagatgctaccagaaaggaatgctgcacctagttaatatgtcaatgaaaattggcgtga 739

                                                                       
Query: 239 aagtatatacctatgcattaaatggaaaatacacaaaggaattcatcacagttgaatgaa 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aagtatatacctatgcattaaatggaaaatacacaaaggaattcatcacagttgaatgaa 679

                                                                       
Query: 299 gcagcatctgaagaataaagtcatttagaggtgaactagatcttgaaggttctgagagac 358
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 678 gcagcatctgaagaataaagtcatttggaggtgaactagatcttgaaggttctgagagac 619

                                                                       
Query: 359 aagcgtattcaaaaataggcagaggaagcgtttcctgggtggggaaagtcaaaaaacaac 418
           ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 618 aagtgtattcaaaaataggcagaggaagggtttcctgggtggggaaagtcaaaaaacaac 559

                                                                       
Query: 419 ttaaaaactgaagtctaaaaggtggattacaaaggtcagatccagggggcaggaaagacc 478
           ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttaaaaattgaagtctaaagggtggattacaaaggtcagatccagggggcaggaaagacc 499

                                                                       
Query: 479 gaatcaaagtcttgtagatgactttatgtttggtaaaatggaaaagctacaaaggacaag 538
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 498 gaatcaaagtcttgtagatgactttgtgtttggtaaaatggaaaagctacaaaggacaag 439

                                                                       
Query: 539 ggaagatagaaggcaaaagaaaaaaatggatgacctctgaccttgaccagcagagattat 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ggaagatagaaggcaaaagaaaaaaatggatgacctctgaccttgaccagcagagattat 379

                                                                       
Query: 599 tgactcagatataaaaatagaaggaaaaaaaaaacctgtcagtaaataaaatgtccgatg 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tgactcagatataaaaatagaaggaaaaaaaaaacctgtcagtaaataaaatgtccgatg 319

                                                                       
Query: 659 cttgcttttccatccaaagagatagaagcactaagtgactctcagcttcttcagctggtc 718
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cttgcttttccatccaaagagatagaagcactaagtgactctcagcttcttcagctggtc 259

                                                                     
Query: 719 atacctcagcaactcaaagagatttctcaaaagaattgcaaaattaatagttccctgg 776
           |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 258 atacctcagcaactcaaagagatttcgcaaaggaattgcaaaattaatagttccctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 776
Length of database: 1173
Length adjustment: 10
Effective length of query: 766
Effective length of database: 1163
Effective search space:   890858
Effective search space used:   890858
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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