BAC Information

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BAC

Clone NameMSMg01-062F11
Chromosome6 (Build37)
Map Location 133,603,767 - 133,604,353
singlet/doubletsinglet
Overlap genenone
Upstream geneTas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik, EG545884, EG626372, LOC100043649
Downstream geneLOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6, LOC100043660, Bcl2l14, Lrp6, Mansc1, Loh12cr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062F11.T7 (MSMg01no062_f11.b1)MSMg01-062F11.TJ (MSMg01no062_f11.g1)
ACCAG288338AG288339
length1,2071,190
length of high quality
(start - end)		785 (94 - 878)670 (89 - 758)
definitionCHROMAT_FILE: MSMg01no062_f11.b1 PHD_FILE: MSMg01no062_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:50 2005CHROMAT_FILE: MSMg01no062_f11.g1 PHD_FILE: MSMg01no062_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:50 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCCCGTACCTTNNNNGGGCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCACCTGAGGAATACCCTTTAAACAGAGAAGCACTTG
AAAAAATGTTCAACATCCTTCCTCATAAGGGAAATGCAAATCAAAACAAC
CCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAG
GTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCAT
TGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCG
GTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTC
TCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGC
TCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGA
ACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCT
ACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTC
CTAGCCAAGTGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACA
TTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGATATTAGC
CCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGA
AACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGA
TTTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACGGAGTTTGGAGC
TGAGATGAAAGGATGGACCATGTAGAGACTGCCATATCCAGGGATCCACC
CCATAATCAGCATCCAAACGCTGACACCATTTGCATACACTAGCAAGATT
TTATTTGAAGGACGCAGATGTAGCTGTCTCTTGTGAAAATATGCCGGGGC
CCCAGCAACACAGAAGTGTAAGCTCACAGTCAGCTAAAGGAAGGATCATA
GGGCTCCCAATGTAGGAGCTAGAGAAAGAGCCCAAGAAGCTAAGGGAACT
GCAACCCTATAGGGGAAAACACATTATGAACTAACCCGGAACCCCGGAAA
CTCTTGAATCCAGCGGGCAATAATACCAAAAAAAGGCCCAATCCGCCCCT
CCTGGTAAAAAAGAGCCCCTTGGAATTTGGAAACTTTTTATGGCCCCCTT
ACAGGGA

CGTTCATTTTNNNTTCCAAGTGAGGCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAGTGCACTTATCCTCCAA
AACAAAACACCAAGATCCCTTAAATTTTCCCAGAATACCTATCAAACTAC
TCCCTATTTGAAATTACACTGCATTTTTGAAATTAATTAAATTAATTGCA
TAATTCAGCTTGAAAATATGTCTCACTCACTTGTTTCTTCAATGTCCTTA
GTACAGCCAGGAGACAAATCCCTGAATACCCATCTTAAAATGTTTCATGA
TATCCTTAGCATTCTGGAGGTGGGCTGAGTAAAATATATGGTGTTGTCTC
TGATGATTATAGGTTAGCATCTACTGATTTAAATTTATTTTATATTTCTA
TACTTTGAATTAATCCTGGTGTGTCTGTCTGTATCTTGTTTCTGGCAACC
ACTATGCAGCAAACCTGGCTGCTACTAATATTTACTCTATGATAATATAC
TCTGAAATCTGTACTTATTTCCTGTTTTGTTACATTGTGTAGAACATTTC
CTGAACACAAAATGGACCACCATACTCCTCTCTCCAAGAATTTTATGGAT
TTCAGGTGGACTTTAAGGGAAAAGACGATATTACATGCTAAAACATAACT
ATTCCAAACTTTCTCACAGAAAACCTATGATCCTGTTTCTTTTAATCATG
TCCATCATCTTCCCTGTTTTCTCCATTCTTTTCCTTGAATGTCTCCAGAT
CCTACCCTGTAAACCTTGGTACCTTCATCTGTTTTGTGAGGTGAGTTCAG
GGCCAGGAGTTCTGCTGTGAGCAGGACCACATGCATCTGTGGGGAGGCTC
TGGACTTCCCCAGCTGTGTGCTGGGACATACACCACTATACTTTTTACCA
AAGATAGTAAAACAATGGCATCTTTGAGCATCACCTGGGTAACTTTGCTG
CATAATTTCTCTTTGGACTGTTCGCCCGTGGTTGGAATGTGGTAGGTTTT
CACTGTGCCTTTATCTATGGGAATAATACCTATTTTGTTTATAATGTTAA
CCTTTTATTTTTCTCTTTACAAACAAGTAATAATCCCCTTTTGTTGCATT
TACTAACCTTTTTCTATTACCTCCCCTGAATATGAAAAACCTTTTTTTTT
GTTTTTCCTCTCCCTACNCTTTTTTATTTATATGGTCGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_f11.g1 MSMg01no062_f11.g1 CHROMAT_FILE:
MSMg01no062_f11.g1 PHD_FILE: MSMg01no062_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:50 2005
         (670 letters)



>mm_chr6_133603767_133604836
          Length = 1070

 Score = 1073 bits (555), Expect = 0.0
 Identities = 582/595 (97%), Gaps = 8/595 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttatcctccaaaacaaaacaccaagatcccttaaattttcccagaatacctatcaaact 60
           |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 587 cttatcctccaaaacaaaacaccaagattccttaaattttcccagaataactatcaaact 528

                                                                       
Query: 61  actccctatttgaaattacactgcatttttgaaattaattaaattaattgcataattcag 120
           ||||||||||||||||||||||||||||||||||||      ||   |||||||||||||
Sbjct: 527 actccctatttgaaattacactgcatttttgaaatt------at--gttgcataattcag 476

                                                                       
Query: 121 cttgaaaatatgtctcactcacttgtttcttcaatgtccttagtacagccaggagacaaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 475 cttgaaaatatgtctcactcacttgtttcttcaatgtccttagtacagtcaggagacaaa 416

                                                                       
Query: 181 tccctgaatacccatcttaaaatgtttcatgatatccttagcattctggaggtgggctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tccctgaatacccatcttaaaatgtttcatgatatccttagcattctggaggtgggctga 356

                                                                       
Query: 241 gtaaaatatatggtgttgtctctgatgattataggttagcatctactgatttaaatttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gtaaaatatatggtgttgtctctgatgattataggttagcatctactgatttaaatttat 296

                                                                       
Query: 301 tttatatttctatactttgaattaatcctggtgtgtctgtctgtatcttgtttctggcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tttatatttctatactttgaattaatcctggtgtgtctgtctgtatcttgtttctggcaa 236

                                                                       
Query: 361 ccactatgcagcaaacctggctgctactaatatttactctatgataatatactctgaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 ccactatgcagcaaacctggctgctactaatatttactctatgataatatactctgaaat 176

                                                                       
Query: 421 ctgtacttatttcctgttttgttacattgtgtagaacatttcctgaacacaaaatggacc 480
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 ctgtacttatttcatgttttgttacattgtgtagaacatttcctgaacacaaaatggacc 116

                                                                       
Query: 481 accatactcctctctccaagaattttatggatttcaggtggactttaagggaaaagacga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 accatactcctctctccaagaattttatggatttcaggtggactttaagggaaaagacga 56

                                                                  
Query: 541 tattacatgctaaaacataactattccaaactttctcacagaaaacctatgatcc 595
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  tattacatgctaaaacataactattccaaactttctcacagaaaacctatgatcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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