BAC Information

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BAC

Clone NameMSMg01-062O17
Chromosome6 (Build37)
Map Location 3,536,119 - 3,536,509
singlet/doubletsinglet
Overlap geneCcdc132
Upstream geneLOC100039885, LOC100039896, LOC100040185, EG667335, Samd9l, AI987662
Downstream geneCalcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1, LOC667381, LOC100039965, Col1a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062O17.T7 (MSMg01no062_o17.b1)MSMg01-062O17.TJ (MSMg01no062_o17.g1)
ACCAG288781AG288782
length9921,103
length of high quality
(start - end)		608 (70 - 677)636 (88 - 723)
definitionCHROMAT_FILE: MSMg01no062_o17.b1 PHD_FILE: MSMg01no062_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:01 2005CHROMAT_FILE: MSMg01no062_o17.g1 PHD_FILE: MSMg01no062_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATGCGGCCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGGTT
GTTCCATGCCCCATAAAAGTATTTCTGCACACCACCCCCAACCCCATCAG
TCCGTTTAGCATCCTGAAAAGCCCCACACATTATAAGAACAAGCTTTTGG
CTTCATGGACTTCTGTCCTCTTGCTTGATACCAGTTTTTCCTTACTATTT
ACCTCTTTCTTTTTTTGGGGCGGGGATGGTGGTGAATTTGTACTTTTTAT
TTACTCTCCTCCTTCTTTTCTTTTTGCTGTTGACACTGAAGGGTAGACAC
TTCCCCCAAAGCCCAGCCAAGGTGCAGCACAACATGTAATACGTGTGCTG
TCACCACCACTCACGAGCTTTTCTGATTCTCTTGTAATTTCTTCTTTGAA
CCAAGAAGACCATTTAATTTCCAAATACCTGGAATTTTCCTAGCTATCTT
ATTGTTACTAATTTTCAATACAATTAGATTGTTGTGTCACTAGATTATAC
CTGTATAGTACTGAAGTCTTTAAAAAACTTTTGGGATGCGCTTAGAGGTC
CAGGTATGAAGAACCAAGTTTTTATCTGGTATATTTATTACCTTTTAGTC
GGAACACTTCTCTGAGGAAATGCTCTTAACTGCTAAGCCATTTCCTTAGC
TACCAGTTTCTAAATTCTTACTGATGCTAAGCACACACTTGGTAGTAACA
AATTCTGGGGCAACAATCTGTTTAAACCTTGGTTTCTGTCTGTATTTGGT
GTTCTTTTCCTAAAAAAATTTCCAGAATTTTAAAACCTGTGGTATTAAAC
AGGTTCATGGTTCTTTGAAAATAACTTTGGGATTTCCGAACCTAAATAAT
TCCCAAATTTTTTTTACTTAAAAAACCTTATTGTTTAAGTTATTTAAAAA
GTCCCCTATCCCCCTTTTTTTTCCATCAAAAGGGAAAAATATATATTTTT
TCCTCTTTGTGTAAAAAAAAAGTTTTAATTCCTCCCCTCAAA

TTCCCGATCTCCTTTTTCAGATGTGAGGCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTTTCACCTCTGTCATAT
TCAGGGAACATCTTCTAAGACCAAGTATGAAAATGGGGCACATGGAACAG
CTGATAAAGCGGCTGCCAAGTAAGAATGAGGACATGAGCTGTGAGCCCCA
GTACACACATAAAATGTGGGCACAGCAGCATGATTTGATTCCATACTGAA
CTGGATTTCTTACAAGGTCATTAAGATGAGAAGGTATGTAGATTGGGAAA
TTAAAAGTAAAATTATTAGCACTATGTTGGGAGCTATTAAGACAACTCTA
TTGTCTTGATCTCCTTATTGGGATCAAGACAACAAAAAAAGGGGTTCAAA
AGTGGGCCACCAACGCACCGTTCCGAGAACAACCACAGAATGTTCCAGCC
CTAAGTCAGCGCCAGATGTCCTGACCACAAGATGTACCCTGATACCACCA
AGTTCCTGCTTCCCCATTTAGTTGCCAAAAGAAAAATTTCTGCTGCCCCA
TCCCTCCTGCTGAGTACTTCCTCCTTTGCTTGTGCATTTCTGCTGTCCCA
TTCCTCCTGCTGAGAAGTACTTCCTCCTTTGCTTGTGCATTTCTGCTGTC
CCATTCCTCCTGCTGAGAAGTACTTCCTCCTTTGCTTGTGCATTTCTGCT
GTCCCATTCCTCCTGCTGAGAAGTACTTCCCCCTTTTGCTTGTGCATTTA
AGCCTTGAAGCCTTGCTTGAATAACAGTGACCCCCTTGATGCTTACTGAG
ACTGGCTTTCTGTGTCGCTTCCTGGCACTTGATGTTCCATTCTTCTCCCC
TCCCCCCCAATTTGGGTTCCTTTAGGAAGAAAGGGTCCCCCCTCCGAAGA
ACCCTTCGAAAATAAATTTGGAACCCCTGGCCTGGGAAACAGGGTCCCAC
CCCCCTTATTTTAAAACCCCTTAAATTAAAGGAAACCCCCTTTGTGAAAA
AGAGAATATAATAAATGTGGACACCCTTATAAATTTTTCTTGTGTTATGT
GAAAAGGGGTNATATAAAAAAAATTTGGCCCTTTAAATAATATTAGTGTA
AAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_o17.b1 MSMg01no062_o17.b1 CHROMAT_FILE:
MSMg01no062_o17.b1 PHD_FILE: MSMg01no062_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:01 2005
         (608 letters)



>mm_chr6_3536119_3537126
          Length = 1008

 Score =  710 bits (367), Expect = 0.0
 Identities = 385/391 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatttctgcacaccacccccaaccccatcagtccgtttagcatcctgaaaagccccacac 60
           ||||||||||||||||||||||||||||||||  | ||||||||||||||||  ||||||
Sbjct: 391 tatttctgcacaccacccccaaccccatcagtatggttagcatcctgaaaagttccacac 332

                                                                       
Query: 61  attataagaacaagcttttggcttcatggacttctgtcctcttgcttgataccagttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 attataagaacaagcttttggcttcatggacttctgtcctcttgcttgataccagttttt 272

                                                                       
Query: 121 ccttactatttacctctttctttttttggggcggggatggtggtgaatttgtacttttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ccttactatttacctctttctttttttggggcggggatggtggtgaatttgtacttttta 212

                                                                       
Query: 181 tttactctcctccttcttttctttttgctgttgacactgaagggtagacacttcccccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tttactctcctccttcttttctttttgctgttgacactgaagggtagacacttcccccaa 152

                                                                       
Query: 241 agcccagccaaggtgcagcacaacatgtaatacgtgtgctgtcaccaccactcacgagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 agcccagccaaggtgcagcacaacatgtaatacgtgtgctgtcaccaccactcacgagct 92

                                                                       
Query: 301 tttctgattctcttgtaatttcttctttgaaccaagaagaccatttaatttccaaatacc 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 91  tttctgattctcttgtaatttcttctttgaaccaagaagatcatttaatttccaaatacc 32

                                          
Query: 361 tggaattttcctagctatcttattgttacta 391
           |||||||||||||||||||||||||||||||
Sbjct: 31  tggaattttcctagctatcttattgttacta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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