Query= MSMg01no062_p20.b1 MSMg01no062_p20.b1 CHROMAT_FILE:
MSMg01no062_p20.b1 PHD_FILE: MSMg01no062_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:10 2005
(702 letters)
>mm_chr6_107410610_107411711
Length = 1102
Score = 1303 bits (674), Expect = 0.0
Identities = 695/702 (99%)
Strand = Plus / Plus
Query: 1 tcagaattgcctctagtattgtaagagagaccgtgaaagaaatcaggccccactatctac 60
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 201 tcagaattgcctctagtattgtaagagagatagtgaaagaaatcaggcattactatctac 260
Query: 61 tacatagagttagaaatctcaggacaagcttagcaaagtatacttagaatcttcattaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacatagagttagaaatctcaggacaagcttagcaaagtatacttagaatcttcattaca 320
Query: 121 gtcaggtatggcagactacattgcatattaagagaaagttggtgagtctgacaaatggcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcaggtatggcagactacattgcatattaagagaaagttggtgagtctgacaaatggcg 380
Query: 181 attccctacagatacttaaaagagaatcaaagttactcccatatgcaggaatttacaaag 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 attccctacagatacttaaaagagaatcaaagttactctcatatgcaggaatttacaaag 440
Query: 241 agctaggaagaaggaagtttgtggtctaagaaggaactagagtaaatacttagaactata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agctaggaagaaggaagtttgtggtctaagaaggaactagagtaaatacttagaactata 500
Query: 301 gatagctgggtcatgcttagaggcaattagaggcaattaggactgactgaggctggccca 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatagctgggtcatgctaagaggcaattagaggcaattaggactgactgaggctggccca 560
Query: 361 tggcactcccccagtgcttttcccttactgaaattccttggacagtaatttatagagcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggcactcccccagtgcttttcccttactgaaattccttggacagtaatttatagagcaa 620
Query: 421 gtgttacctgggaaaggaattctggctgagtgggactcatctacttgatcctatattgga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgttacctgggaaaggaattctggctgagtgggactcatctacttgatcctatattgga 680
Query: 481 gaatacaggaatttacaatggcctagggggaaggcagactatacaatggaatagaattgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaatacaggaatttacaatggcctagggggaaggcagactatacaatggaatagaattgg 740
Query: 541 aactactacaagggcgtaaagcccttgcccctggcttctaagattaaactgaccttaggt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aactactacaagggcgtaaagcccttgcccctggcttctaagattaaactgaccttaggt 800
Query: 601 ggggctgcttttgaccccagttgttaacattgatttttatcccagttggttcctttagct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggggctgcttttgaccccagttgttaacattgatttttatcccagttggttcctttagct 860
Query: 661 ttttgtatgcattcttctgttttgtgaaaaagtcacttataa 702
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ttttgtatgcattcttctgttttgtgaaaaagtcacttataa 902
Score = 122 bits (63), Expect = 1e-31
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 329 agaggcaattaggactgactgaggctggcccatggcactcccccagtgcttttcccttac 388
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1036 agaggcaattaggactgactgaggctggtccatggcactcccccagtgcttttcccttac 1095
Query: 389 tgaaatt 395
|||||||
Sbjct: 1096 tgaaatt 1102
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space: 755664
Effective search space used: 755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_p20.g1 MSMg01no062_p20.g1 CHROMAT_FILE:
MSMg01no062_p20.g1 PHD_FILE: MSMg01no062_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:10 2005
(412 letters)
>mm_chr6_107548974_107549785
Length = 812
Score = 737 bits (381), Expect = 0.0
Identities = 402/409 (98%)
Strand = Plus / Minus
Query: 1 acatccctccatggcctctgcatcagctcttgcttcctgacctgcttgagttccagtcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 acatccctccatggcctctgcatcagctcttgcttcctgacctgcttgagttccagtcct 726
Query: 61 gacttcctttggtgataaacagcaatgtggaaaatgtaagctgaataaaccctttcctac 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 725 gacttcctttggtgataaacagcaatgtggaaaatgtaagctgaataaaccctttcctcc 666
Query: 121 ccaacttgcttcttggtcatgatgtttgtgcaggaatagaaaccttgactaagacacaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ccaacttgcttcttggtcatgatgtttgtgcaggaatagaaaccttgactaagacacaga 606
Query: 181 gacaccctgaaagacagtttcagagtgttctgattcatatgaggatcctatagttgaagg 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gacaccctgaaagatagtttcagagtgttctgattcatatgaggatcctatagttgaagg 546
Query: 241 tttatatttgtgtgacaacttgtttttaaaccaacatagaattgatcaggtccaaagagg 300
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 545 tttatatttgtgtgacaacttggtcataaaccaacatagaattgatcaggtccaaagagg 486
Query: 301 ctaagactggccactgtaatctctggattcaactcttacctgaatgagggctaaggctac 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 485 ctaagactggccactgtaatctctggattcaactctaacctgaatgagggctaaggctac 426
Query: 361 aagtatccagtgttttaatttttagggcaggttgggggagggttttttt 409
||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 425 aagtatccagtgttttaatttttagggcaggttggaggagggttttttt 377
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space: 323609
Effective search space used: 323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
