Query= MSMg01no063_e22.b1 MSMg01no063_e22.b1 CHROMAT_FILE:
MSMg01no063_e22.b1 PHD_FILE: MSMg01no063_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:37 2005
(569 letters)
>mm_chr6_144232020_144232989
Length = 970
Score = 1033 bits (534), Expect = 0.0
Identities = 561/570 (98%), Gaps = 1/570 (0%)
Strand = Plus / Minus
Query: 1 agagtgtttgtcctc-aaattaattagatgcttggaatttaaaaaatgagaatcaattta 59
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 770 agagtgtttgtcctcaaaattaattagctgcttggaatttaaaaaatgagaatcaattta 711
Query: 60 aaaattaggaaactcatgttttcaatttaaacaagttaattcttggtgtcaataccatat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 aaaattaggaaactcatgttttcaatttaaacaagttaattcttggtgtcaataccatat 651
Query: 120 ttaagacagctagcaacaacagcacaggttgtataactccactattaaagttgccattaa 179
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 650 ttaagacagctagcaacaacagcacaggctgtataactccactattaaagttgccattaa 591
Query: 180 ataaatagcctagtgttatacgtgttggtgtcgatatggcagaagttatatgctttgtga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ataaatagcctagtgttatacgtgttggtgtcgatatggcagaagttatatgctttgtga 531
Query: 240 tgatgcttatactgtggttttatttattctgaaattcattgagggggggaggagagcaaa 299
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tgatgtttatactgtgattttatttattctgaaattcattgagggggggaggagagcaaa 471
Query: 300 gactggctcacttatcctgctggaagccttctgctagggctttgtgggaacacagctgac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gactggctcacttatcctgctggaagccttctgctagggctttgtgggaacacagctgac 411
Query: 360 aaggacaataagaatcacagcttcatttgttgagcaatgacacagttgcttggcaatttg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aaggacaataagaatcacagcttcatttgttgagcaatgacacagttgcttggcaatttg 351
Query: 420 aactcctacttctaccttcttgataatcaaagatgtggtcaacaccacggttccatcttt 479
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 350 aactcctacttctaccttcttgacaatcaaagatgtggtcaacaccacggttccatctgt 291
Query: 480 gggccttcgagagcagagaatctccaagaatgttattgtgcatcattgagcagacatcct 539
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gggtcttcaagagcagagaatctccaagaatgttattgtgcatcattgagcagacatcct 231
Query: 540 cacctaacttctgaacactctgtttctgtc 569
||||||||||||||||||||||||||||||
Sbjct: 230 cacctaacttctgaacactctgtttctgtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 970
Length adjustment: 10
Effective length of query: 559
Effective length of database: 960
Effective search space: 536640
Effective search space used: 536640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no063_e22.g1 MSMg01no063_e22.g1 CHROMAT_FILE:
MSMg01no063_e22.g1 PHD_FILE: MSMg01no063_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:37 2005
(290 letters)
>mm_chr6_144158022_144158711
Length = 690
Score = 491 bits (254), Expect = e-143
Identities = 274/290 (94%), Gaps = 16/290 (5%)
Strand = Plus / Plus
Query: 1 tctctcctggacatccctgaatggtagaagtcaactagtctcccatgctctctctctctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 tctctcctggacatccctgaatggtagaagtcaactagtctcccatgctctctctctctc 276
Query: 61 ctctaaataataaaagtcaacacgctcacgcacacacacacacacacacacacacacaca 120
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 277 ctctaaataataaaagtcaacacgctcacg------cacacacacacacacacacacaca 330
Query: 121 cacacacacacacacgcacgcacaccaccaccaccaccagtatcattgtgcaaaatacat 180
||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 cacacacac----------gcacaccaccaccaccaccagtatcattgtgcaaaatacat 380
Query: 181 ttggggctgattaaaaaataactttgtcataacggagccccaatcaaactgtgagcatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggggctgattaaaaaataactttgtcataacggagccccaatcaaactgtgagcatta 440
Query: 241 actaattaagcaaaatgattacacattagtcacagcatttttacacaaag 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actaattaagcaaaatgattacacattagtcacagcatttttacacaaag 490
Score = 87.7 bits (45), Expect = 7e-22
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 81 cacgctcacgcacacacacacacacacacacacacacacacacacacacacac 133
||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 571 cacgcgcacgcacacacacacacacacacacacacacacacacacatacacac 623
Score = 80.0 bits (41), Expect = 2e-19
Identities = 54/59 (91%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 89 cgcacacacacacacacacacacacacacacacacacacaca--cacacgcacgcacac 145
||||| |||||||||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct: 575 cgcacgcacacacacacacacacacacacacacacacacacatacacactcactcacac 633
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 8
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
