TATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTAGGTTTGCTTAGGTAGAATGTAAAATTGAATAAGTTTTTTTTA
AAAGAGAGGTCCTTTTTATACGCTTTTATATGTTTTATATGTATAACACA
GTTCAAATGTATATGTCCTTTGATGTGCAGTTACACGTCTAAAAAACCTT
ACTGAGAAATAGAAAGCATATGTACAAAGATTGATATACAAAGAGGTTTA
CTGCTCAGTTTGTCAGTTATGAGATATCAATAAATATCATCTACTGGTAG
GCTAAGTATAGGTTATTTAAATGTAATTGGTTGATGAAATATTTTAAATA
GAATTTACACTTAATTTACATCTAACACAAGGATAAGAGAAAACTAATGT
AAGTGTTATAGGAGATCTATATTTATATATGAATATATTCAATTAAATAT
TAGCTATAAGTAAATTAGTTAACTTTGTACTGAGCAGCGACCTGAGAATC
AGGTATTATAGAGACAAACTGCATTTTGCATACCACTACTCCTGAAATTT
ATGATAGCAAGTATATGTCAATTTAAGCAAAATAGTCAGAATTATTTTCC
CCTTTACTTGAAAATAAAATGTTTATCATAAAACACATCCTAACATTTGA
AGGAAGAAAATAATCATTGTGTTGTGCGCATGTACCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXATTAACCTTACTTTAGGAGAGGAAAATTTACATTGCATTCAGTTCTC
TATGATTACACCAATATTTCATCATTGATGTACATTGATCACAAAAAACA
TTTCCTTGGTTTCCCAGCATCTTTTGTACATTTTAATTGGCTGAAACCTA
ATAAGTCTATATTGATACTTACATTATCACTAGGCCTGCAATCCAGTATC
TACATGTACAAATGCCCACAACCTATAAATAAAGAACTATACATATACAT
ATACTTGTGGTATTTTACTGAGAAAGGGTCTTCTATTAGTCTCTTTGCAC
CCTTGTTCCACAGAATTTTTTTTATTCTTGGATATTCAAATCAATACATT
TTTTAAAAATAACTTTTCTTTGTAGTCCCTTATTTGTGGAATCTTTCTCA
TCAGGAAATGAAAGAAATTTATTGTCATTACCTCATCTCTTCACTCCTAA
TATGACAATTGACCACTTCAACAGAACCAAGTAAGTGAAATAGCCCAAAA
CTGAATAACAACAAAGCCAGAATCATTGACTTTCCAGGAAAACCTGCGAT
AATACTTAAATTTCTCATCTCCCAATAATTAAGATCTCCTGGTGTTTGAC
AATA

Query= MSMg01no063_h10.b1 MSMg01no063_h10.b1 CHROMAT_FILE:
MSMg01no063_h10.b1 PHD_FILE: MSMg01no063_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:50 2005
         (295 letters)



>mm_chr6_44303575_44304269
          Length = 695

 Score =  534 bits (276), Expect = e-156
 Identities = 290/296 (97%), Gaps = 3/296 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtagaatgtaaaattgaataag---ttttttttaaaagagaggtcctttttatacgct 57
           ||||||||||||||||||||||||   ||||||||||||||||||||||||||||| | |
Sbjct: 683 aggtagaatgtaaaattgaataagtttttttttttaaaagagaggtcctttttatatgtt 624

                                                                       
Query: 58  tttatatgttttatatgtataacacagttcaaatgtatatgtcctttgatgtgcagttac 117
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 623 tttatatgttttatatgtataacacagttcaaatgtatatgtcctttgatgtgcagtttc 564

                                                                       
Query: 118 acgtctaaaaaaccttactgagaaatagaaagcatatgtacaaagattgatatacaaaga 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acgtctaaaaaaccttactgagaaatagaaagcatatgtacaaagattgatatacaaaga 504

                                                                       
Query: 178 ggtttactgctcagtttgtcagttatgagatatcaataaatatcatctactggtaggcta 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ggtttactgctcagtttgtcagttatgagatatcaataaatatcatctactggtaggcta 444

                                                                   
Query: 238 agtataggttatttaaatgtaattggttgatgaaatattttaaatagaatttacac 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agtataggttatttaaatgtaattggttgatgaaatattttaaatagaatttacac 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no063_h10.g1 MSMg01no063_h10.g1 CHROMAT_FILE:
MSMg01no063_h10.g1 PHD_FILE: MSMg01no063_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:50 2005
         (284 letters)



>mm_chr6_44157901_44158584
          Length = 684

 Score =  263 bits (136), Expect = 8e-75
 Identities = 139/140 (99%)
 Strand = Plus / Plus

                                                                       
Query: 143 acctaataagtctatattgatacttacattatcactaggcctgcaatccagtatctacat 202
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 343 acctaataagtctatattgatacttacattatcactaggcctgcaatcctgtatctacat 402

                                                                       
Query: 203 gtacaaatgcccacaacctataaataaagaactatacatatacatatacttgtggtattt 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gtacaaatgcccacaacctataaataaagaactatacatatacatatacttgtggtattt 462

                               
Query: 263 tactgagaaagggtcttcta 282
           ||||||||||||||||||||
Sbjct: 463 tactgagaaagggtcttcta 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)