BAC Information

Click to search

BAC

Clone NameMSMg01-063H21
Chromosome6 (Build37)
Map Location 81,860,852 - 81,861,274
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042991, LOC232143, 1700009C05Rik
Downstream geneAW146020, Mrpl19, Tmem166, EG622198, Tacr1, Pole4, LOC100043412, Hk2, EG622318
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063H21.T7 (MSMg01no063_h21.b1)MSMg01-063H21.TJ (MSMg01no063_h21.g1)
ACCAG289220AG289221
length784761
length of high quality
(start - end)
432 (114 - 545)283 (132 - 414)
definitionCHROMAT_FILE: MSMg01no063_h21.b1 PHD_FILE: MSMg01no063_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:52 2005CHROMAT_FILE: MSMg01no063_h21.g1 PHD_FILE: MSMg01no063_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCTTTTCCCCCCCNTCTT
TCACATGACACCCCTTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCGCGGAATTCCATATTTACCAATTTAGATATAGTCTT
CACTTACGATGATGTGCACGCAGCACTTTCTGTAGCAGAAAATGAAAATC
ACAGCTGAAGCAAATAGAAACCTCTAAATTAGGTATAGGTATGTCAATAT
TGTACAGGTTAAACTATAGCACCTTTAGGTATGTTGACTATAGTTAGCAA
AGTGTTCTGTGGCTTTTAAAACTAAAGTGGATAAAAGTATACACATATAC
ACACACATATGGAGAAATGTGTATATGTATGTATATATGTATACATATAC
ACACACACGGAAAAATACATATGGAGAAATGTATAGCGTGCGTAACATTG
CTTTAGGGTAGATAAAGGGTACACATGTGTAGAATAAATACTTATGGACA
ATATATAAAATTGATGATGACTGAGAATGTCATAAAGGACAGGTGTGCCT
GCGTATGCGTGCCCTCTAAATTCTCTCTTTCCCTCCCATTCTCTATCGTT
ACATTCGTCTTCTACCCCGCCTATCTTCTTCCACCCCATCCCGACATCAA
AACACCACCCTACTCCCCCACACACCTCTCCCTCTTTTTCCTGCATTCAC
CACCCTCATCCCCCTCCCCTCCACTATTTCTTACCTCCCTTTCTTTTTAT
TTTTTCTCTTCTCCTTTTGCTTATATTCTCTTTG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNCCCCCCCTAGGTT
GNNCAACGATTGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAA
TGGCAGAGAAGCACCTGAAAAATGCTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCT
GGAGATCAGTCTGGCGGTTCCTCATAAAACTGGATATAGTACTACCGGAG
GATCCAGCAATATTTTTTCTGGCCCCATATCCCGAAGATGCCCCAACTGG
TAAGAAGGACACATGCTCCACTATGTTAATAAAAACCTTATTTATAATAG
CCTGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAC
AAGACGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAACTTATGAATCTCCTGGCCCCTTGTATGGCACCTGGCAGGTCATCAT
CCCGAAGCGAGGTAACCCCTTCCCCAAAGGATCTCCCCACAATATGTAAT
CCCTTGATAAGTGGTAAATTATCCCAAAACCCCTACATATTCCTAAATTT
AAGATACAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_h21.b1 MSMg01no063_h21.b1 CHROMAT_FILE:
MSMg01no063_h21.b1 PHD_FILE: MSMg01no063_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:52 2005
         (432 letters)



>mm_chr6_81860852_81861683
          Length = 832

 Score =  578 bits (299), Expect = e-169
 Identities = 374/427 (87%), Gaps = 44/427 (10%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccatatttaccaatttagatatagtcttcacttacgatgatgtgcacgcagcac 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ggaattccatatttagcaatttagatatagtcttcacttacgatgatgtgcacgcagcac 364

                                                                       
Query: 64  tttctgtagcagaaaatgaaaatcacagctgaagcaaatagaaacctctaaattaggtat 123
           ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 363 tttctgtagcagaaaatgaaaatcacaaccgaagcaaatagaaacctctaaattaggtat 304

                                                                       
Query: 124 aggtatgtcaatattgtacaggttaaactatagcacctttaggtatgttgactatagtta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 303 aggtatgtcaatattgtacaggttaaactatagcacctttaggtatgttgattatagtta 244

                                                                       
Query: 184 gcaaagtgttctgtggcttttaaaactaaagtggataaaagtatacacatatacacacac 243
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 243 gcaaagtgttctgtggcttttaaaactaaagtgaataaaagtatacacatatacacacac 184

                                                                       
Query: 244 atatggagaaatgtgtatatgtatgtatatatgtata----------------------- 280
           |||||||||||||||||||||||||||||||| ||||                       
Sbjct: 183 atatggagaaatgtgtatatgtatgtatatatatatatatatatatatatatatatatat 124

                                                                       
Query: 281 -----------------catatacacacacacggaaaaatacatatggagaaatgtatag 323
                            ||||||||||||||||||||||||    |||||||||||||||
Sbjct: 123 atatatatatatatatacatatacacacacacggaaaaata----tggagaaatgtatag 68

                                                                       
Query: 324 cgtgcgtaacattgctttagggtagataaagggtacacatgtgtagaataaatacttatg 383
            ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  tgtgtgtaacattgcttttgggtagataaagggtacacatgtgtagaataaatacttatg 8

                  
Query: 384 gacaata 390
           |||||||
Sbjct: 7   gacaata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)