BAC Information

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BAC

Clone NameMSMg01-064B20
Chromosome6 (Build37)
Map Location 120,802,136 - 120,802,450
singlet/doubletsinglet
Overlap geneBcl2l13
Upstream geneLOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1
Downstream geneBid, Mical3, LOC100043793, Minpp1-ps, Pex26, Tuba8, Usp18, Slc6a13, Slc6a12, Iqsec3, LOC100043486, A2m, EG640530, Mug1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064B20.T7 (MSMg01no064_b20.b1)MSMg01-064B20.TJ (MSMg01no064_b20.g1)
ACCAG289679AG289680
length765738
length of high quality
(start - end)
315 (46 - 360)287 (83 - 369)
definitionCHROMAT_FILE: MSMg01no064_b20.b1 PHD_FILE: MSMg01no064_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:47 2005CHROMAT_FILE: MSMg01no064_b20.g1 PHD_FILE: MSMg01no064_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGGTTCTCCTGTCCCCACCTGTTAAGTACTAGAATATAGGAATG
TACGACTAGGTAAGATCAATCTGGTCTACATGAGACCTTTACTCAAAAAA
ACAAAAACAGAACCAGGCATCTGGCTGCAAACACACTGAAACCCAACTCT
CAAGTAGAGGCAAGTGTGTGTCTATAAGTTCAGTACCAGCGTGGTCTACA
TATCAAGTTCCAATTCTGCCAAGGATACAGTAAGACCATGTCACAAACAA
AGGTGGAAGGAGAGAATTGACTGTCAGCACAGCTGTCTTCTGCAGCATAC
TCATATAAATTCTTTAAATAACCCTCCTCCAAAAAACACAAAAACCACAG
CTGTCCTCTGACCTCCACACGTGTGTGTCAACACACAAGCACATACCCAC
CGAGGTAGTTAAATGAAAGTGGCCCCATAGGTTCATGAGGGTGGTATAAT
AGGAGGTGTGGTCTTGTTGGAGGTGTGGTCTTGTTGGAGCCGCCCTCCCC
CCTTCTCCCTCCCTTCCCCTTCGTTTTCCCCTTCTCCGCTTTCCCTCCCC
TCCTTCGTTCCCTCCTTCTTCCTCTTTTCCCCTCCCTTCCCCTTTCCTCC
CCCTTCCCCCCTTTTTCTTCCTCCGTGCCTTCCCCCCTTCCCCCTCCTTC
CCCCTCCTTCCCCCCCACCTTTGCTCCCTCCTACTCCCATCCCCCCTTGT
CCACCCGAATCCCCA
ATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTTTATGGAGGCTCAC
AACCATCTGTAACTCCAGTTTCAGGGGAATCTGATGCGCTTTTCTGACCT
TCATGGAGTCCTGCACAGGTGTGTTAACATTCATATACTCAGGTGCATGT
ACCCACACACAATATTTATCTATTTATTTATTTATTTAGGGTTTTTTTTT
AGACAGGGCTTACATAATTTTTAAAAAGTTAAAAAATTTAACAAAAAGGT
TGAAAGATTAGTACACTAATGATAGTTTGCTTTTTAAAAATGTACCTCCT
TACAAATGGAATAAAATTAAATGGTTTCCCCCCCCCCCATTTTACTGTCC
TGATTCTGAAGTGAGTTTGTTTCACCCACAGAACAAAAAATTCAGAATCC
TTGGTATGGAGAATCATAAAGTTAAATAAGAACAGTGTCCTCTGTTCTCA
TCAGATTTTTAGCTTAAAAATACTTAGACAGGGACTCAGTGATTAATAAA
TTCAATTTCCAGCATCCGTTTAGTGGCTCCATAACCATCTGTAATTCCAA
TATCAGACCTCCCCTTCTGGCCTTCAGGGGTACCAGGGAGGTATGTATTC
AAACATGTGCAGCCAAAACATCCCTACTTACAATAACACAAAAAATCCTA
ACCGAACAAACTCTCTGAGTCCATACAACTTGTCAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_b20.b1 MSMg01no064_b20.b1 CHROMAT_FILE:
MSMg01no064_b20.b1 PHD_FILE: MSMg01no064_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:47 2005
         (315 letters)



>mm_chr6_120802132_120802850
          Length = 719

 Score =  574 bits (297), Expect = e-168
 Identities = 309/315 (98%), Gaps = 4/315 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctggttctcctgtccccacctgttaagtactagaatataggaatgtac----ga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||     |
Sbjct: 319 gaattcctggttctcctgtccccacctgttaagtactagaatataggaatgtacctaaca 260

                                                                       
Query: 61  ctaggtaagatcaatctggtctacatgagacctttactcaaaaaaacaaaaacagaacca 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctaggtaagatcaatctgatctacatgagacctttactcaaaaaaacaaaaacagaacca 200

                                                                       
Query: 121 ggcatctggctgcaaacacactgaaacccaactctcaagtagaggcaagtgtgtgtctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ggcatctggctgcaaacacactgaaacccaactctcaagtagaggcaagtgtgtgtctat 140

                                                                       
Query: 181 aagttcagtaccagcgtggtctacatatcaagttccaattctgccaaggatacagtaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 aagttcagtaccagcgtggtctacatatcaagttccaattctgccaaggatacagtaaga 80

                                                                       
Query: 241 ccatgtcacaaacaaaggtggaaggagagaattgactgtcagcacagctgtcttctgcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  ccatgtcacaaacaaaggtggaaggagagaattgactgtcagcacagctgtcttctgcag 20

                          
Query: 301 catactcatataaat 315
           |||||||||||||||
Sbjct: 19  catactcatataaat 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 719
Length adjustment: 9
Effective length of query: 306
Effective length of database: 710
Effective search space:   217260
Effective search space used:   217260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)