BAC Information

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BAC

Clone NameMSMg01-064N10
Chromosome6 (Build37)
Map Location 143,610,498 - 143,610,804
singlet/doubletsinglet
Overlap genenone
Upstream geneAbcc9, Cmas, Gm766, EG665037, St8sia1, LOC665056, 5730419I09Rik, Etnk1, D6Ertd474e
Downstream geneSox5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064N10.T7 (MSMg01no064_n10.b1)MSMg01-064N10.TJ (MSMg01no064_n10.g1)
ACCAG290196AG290197
length708746
length of high quality
(start - end)
312 (21 - 332)112 (248 - 359)
definitionCHROMAT_FILE: MSMg01no064_n10.b1 PHD_FILE: MSMg01no064_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:05 2005CHROMAT_FILE: MSMg01no064_n10.g1 PHD_FILE: MSMg01no064_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATAAGCCCAGCACTTGGAA
GGTGGAGGCAGGAGGATTAGAAGTTCAAAGTCACTCTGGGATACAGAGGA
CTCTGTGTCTCTAACACTCATTATAGAAGGGAGACCTTAGGTCGGCAAAT
CAACCACCGAGCCTAAATCAGACGATACACCTCAGTTTAGCCAAGATGGA
GACAAGAGTTCAGCTCACATGGGTCTTTCCAGTGCTCTGTTCTTTTAAGT
CAGACAGCCAGTCCTGAAGCCTAGCAGTTTTGGTAAGCCCACAGTGTACT
GCCGACTCCGTTCAAATACATTCCTTTATAATTGTTTCTTTACCCCCCCC
CCCCCGACTGAGCAACGGTTTATTGCCGCTCTCTAATTGACACAAATGAA
AAAGAGAAAATATAGACTCTCTGGCCTTTTAGAGTTTTGCATTCAAGGAG
CATCTTCTCCTTGCTCCCTTGGGACTTTTGAAACTCTTTGGTTTTTCTTC
TGAAGCTTCTTGTTTGTAGAAATGAAGAAGACCTGATAAAAGGACTGTCA
TGCTACACACTGACAGACTACTTCAAATTCATAAGAGCCATACTTAATGA
CTGGGGATTACTCTGATTTGATTTGAAGTGTCTCCCACAAGTTTATGATA
TAAATGCTTGGGCCCCACCTCCTTGTGCTATTCTGACAGATCGTGCAGCG
GCGCTGGG
CGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCGGGAATGGCTTCAAAAAGCTGAGCT
GGGCCCACAGCCAAGGGGTGGGGCTGGACCCGGGGAAGCCACAGGGCACA
CCCGGCAATTGGAACTGGAAAAAAGCTAAAAGCGGGGCCAGGGAACCCAC
ACCGGTTAAAAAAAAAGGCACACCCACAAAAGAAAAAAGTCCATTCCATT
GGTTAAAGGCAAAGGGAGGGAAACCGAAGGAAAGGGAAGAATTCCCCAGG
AAACAAATGGAAAAAGGGTTGACAATTCCCCATTAACCAAAAAAGGCGGG
GGGAAAAGCTTTCGTGATTCCGCCCCCCCCCCCCAAACATTGGTTTCGAA
GGGGATTTAAAAAACCCCCCCCCAAAAAGAAAAAAAAGGGGACTCGAAAC
ACCTCCAGAAACCAAGGGGGAACGGGGTAACCAGGGCCCGGGGGCCTGAA
GGGGCCGTGGGGAAGCAAAACCTGCCACCATTAATTCCCTGGACAAGTTC
GGGAATCCCTAAAGTGGCCCCCAGATCGGAGGGGGCATTCTTCCCCGGGC
GATGGGCCCCCGAGCAATGCCCGGGAGGCCTTCCCCCTACCCCTCCCTCG
CTCCGCCCTCCTTTCCCTTCCGGCCCCCCCCTGATTCCCCTCATCTATCC
CCTCCCGCCCCTTCCCTTCCCCTCCCTTTCCCAACTTAAACGTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_n10.b1 MSMg01no064_n10.b1 CHROMAT_FILE:
MSMg01no064_n10.b1 PHD_FILE: MSMg01no064_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:05 2005
         (312 letters)



>mm_chr6_143610209_143610920
          Length = 712

 Score =  578 bits (299), Expect = e-169
 Identities = 305/307 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctataagcccagcacttggaaggtggaggcaggaggattagaagttcaaagtcac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gaattctataagcccagcacttggaaggtggaggcaggaggattagaagttcaaagtcac 537

                                                                       
Query: 65  tctgggatacagaggactctgtgtctctaacactcattatagaagggagaccttaggtcg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tctgggatacagaggactctgtgtctctaacactcattatagaagggagaccttaggtcg 477

                                                                       
Query: 125 gcaaatcaaccaccgagcctaaatcagacgatacacctcagtttagccaagatggagaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gcaaatcaaccaccgagcctaaatcagacgatacacctcagtttagccaagatggagaca 417

                                                                       
Query: 185 agagttcagctcacatgggtctttccagtgctctgttcttttaagtcagacagccagtcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 agagttcagctcacatgggtctttccagtgctctgttcttttaagtcagacagccagtcc 357

                                                                       
Query: 245 tgaagcctagcagttttggtaagcccacagtgtactgccgactccgttcaaatacattcc 304
           |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 356 tgaagcctagcagttttggtaagcccacagcggactgccgactccgttcaaatacattcc 297

                  
Query: 305 tttataa 311
           |||||||
Sbjct: 296 tttataa 290


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)