BAC Information

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BAC

Clone NameMSMg01-065E01
Chromosome6 (Build37)
Map Location 45,305,197 - 45,305,509
singlet/doubletsinglet
Overlap geneCntnap2
Upstream geneLOC100040210
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065E01.T7 (MSMg01no065_e01.b1)MSMg01-065E01.TJ (MSMg01no065_e01.g1)
ACCAG290507AG290508
length695688
length of high quality
(start - end)
570 (66 - 635)508 (70 - 577)
definitionCHROMAT_FILE: MSMg01no065_e01.b1 PHD_FILE: MSMg01no065_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:42 2005CHROMAT_FILE: MSMg01no065_e01.g1 PHD_FILE: MSMg01no065_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACCTGAGCGATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCA
ACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTAAGATTCCA
CCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCAGAT
GCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAT
TGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGAAA
ATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGAGCATAT
ATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTC
ATAGCAGCATTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCC
CTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGT
ACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGACAAATGG
ATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAA
CTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAGG
ATACCCAAGATTTAAGATACCATTTCCTTAAACACATGAAAATTA
TGCTGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACATGAGGAATAATACTAATAACTAGAAAAA
TTTTTGGCGGGGATATGTAAAGATATAGGATGAAACCCATATTTCTGAAA
CTACAGGGGAATCAAAATATTTTCCATTTAAAATATGCCTATAAGTTTGT
GGAGGGGGGATAGGCATGTGCCCAAAAGAACAGTTTGAGATCAGAGGACA
ACTTGAGCAACTTTTTTCTGTCTACCATGTGGATTACAGGAAATACCTAT
ATTTACTGAGGCATCTTGCTGGTTCCCAAAATTTAATAATAAATTAAACC
ATTTTACAGTTTTATTTTTGTACATTCTAGAAAAAGTTAGAAGCAGATTT
TATGGAGCTATACTTTCTTCAGAATGTTAGATTTTATATGTCATACACAT
CACACACACATACACGCACTCACTGTTTCTATATATATATATATGGGTTG
CATATAGACAGATTCAACCAAACATCAATCAAAAGTGTATTTTTAAAACT
TGTGTTTTGGCATGGGGATATAGCTCCATTGTAGAACATTTGCCTAGTAC
TATTTAGATTCACAAAACCCAACATTAAAAGAAATGATTAGCTTTGCTAT
ATCTCACTATTTATTATGATAATTTTTATTTAAATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_e01.g1 MSMg01no065_e01.g1 CHROMAT_FILE:
MSMg01no065_e01.g1 PHD_FILE: MSMg01no065_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:42 2005
         (508 letters)



>mm_chr6_45304997_45305902
          Length = 906

 Score =  540 bits (279), Expect = e-157
 Identities = 306/317 (96%), Gaps = 6/317 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatgaggaataatactaataactagaaaaattt--ttggcggggatatgtaaagatata 58
           ||||||||||||||||||||||||||||||  ||  ||||||||||||||||||||||||
Sbjct: 201 acatgaggaataatactaataactagaaaa--ttcattggcggggatatgtaaagatata 258

                                                                       
Query: 59  ggatgaaacccatatttctgaaactacaggggaatcaaaatattttccatttaaaatatg 118
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggatgatacccatatttctgaaactacaggggaatcaaaatattttccatttaaaatatg 318

                                                                       
Query: 119 cctataagtttgtggaggggggataggcatgtgcccaaaagaacagtttgagatcagagg 178
           |||||||   ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 319 cctataa--atgtggagggggaataggcatgtgcccaaaagaacattttgagatcagagg 376

                                                                       
Query: 179 acaacttgagcaacttttttctgtctaccatgtggattacaggaaatacctatatttact 238
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 acaacttgagcaacttctttctgtctaccatgtggattacaggaaatacctatatttact 436

                                                                       
Query: 239 gaggcatcttgctggttcccaaaatttaataataaattaaaccattttacagttttattt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gaggcatcttgctggttcccaaaatttaataataaattaaaccattttacagttttattt 496

                            
Query: 299 ttgtacattctagaaaa 315
           |||||||||||||||||
Sbjct: 497 ttgtacattctagaaaa 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 906
Length adjustment: 10
Effective length of query: 498
Effective length of database: 896
Effective search space:   446208
Effective search space used:   446208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)