BAC Information

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BAC

Clone NameMSMg01-065I03
Chromosome6 (Build37)
Map Location 46,418,998 - 46,419,526
singlet/doubletsinglet
Overlap geneCntnap2
Upstream genenone
Downstream geneRbpsuh-rs3, LOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065I03.T7 (MSMg01no065_i03.b1)MSMg01-065I03.TJ (MSMg01no065_i03.g1)
ACCAG290701AG290702
length687689
length of high quality
(start - end)
398 (38 - 435)526 (70 - 595)
definitionCHROMAT_FILE: MSMg01no065_i03.b1 PHD_FILE: MSMg01no065_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:02 2005CHROMAT_FILE: MSMg01no065_i03.g1 PHD_FILE: MSMg01no065_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTGCGGCGCTAAACGACTCCTATTTCAAGAGAATCCGCGGAATTCCT
TTGGTGCCTAAATGAGAATAGCTCCTCATAGGTTTGTATATACAAATACT
TGTTTCCCACTTAGTGGAACTCTTTGGAAAGGATTAGTACTTATGGCCTT
ATAGAAGGTGGTGTGTCATGGACTATGGGCTTTGAAGTTTCAAGAGGTTA
TGTCACCCCTGGTTATCCATCTTTCTCTACTTGTAGTTGTGCCTCAAGAT
ATGAATTAGCTCATAGCTACTGCTCTAGTTCCATCCTGCTCCGATACTCT
ATGATAGTTCTAACCTTCTGACCTATACGTCCCAGATAAACTCTTTCTTC
TATAAGTTTCTTTTGGTCATAGTGTCTTATCAGTCTATTAGAAAAGTAAC
CAAGGCTCTTCCCTACCTTCCTGAATTTCTTGTCTCAGTTTTCCAAGTAC
ATTTATTTAATGGGAATTATAATTCCTCTATTTCAAATACTACTCATAAA
ACTTCTCATTTGAGTTATCCTGTATTTCCTGCCACAAAGGAATTTGCCCC
TTTGACAAAGGAATTATATCAAGACTTGTCTTGTTTTTTATGGTGGGATC
CATCAGAGCTCTTTGGTGATTAAGAAGTTAGGATTATTCTTCTTCCTGCC
ATCATAATCATCTAATAATTTTCTAGGGGTGAAACTA
TGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTGGGGAAAAAGAAGAAGAAAAAGTGAAAA
AAGTAAAGGAAAGATAAAGGGAGAGAGAAAAATCACCTAATACATTTGTA
CTTCTGTTATAATTAAGGTGATAACACCAGTTCGAGTCTCTTGAATATGT
TCACCCTGCTATCTTAAGGATTTTCTTTCCCTAAAAAGTTATTTCTAGCT
AATTATCCTCACTAAGGAATGTAATCTGTCAGCCTGTCTTGCTAATGTTC
CTCACAATGGAGGCTGCTCCAGTGAATAGAAACTGACTTAATGGAGAAAA
TTAGATACTTAGAGGAGTTGATTATTTGGGGATTTTCTTCCAAGGTGAAA
AATGTCATCTATCCCATCAAGAAATTTTTAACAGGGCCTGCTGGGAGAAG
AAGGGCTCCAATCTCTCACAGGGAAGCCACTGAGATATACACTATTGTTA
CCTTTCTTATGTGCCTCATCTTCCCATGCTTGGGAATGACAGGGATTAAG
GGTCAAGGTGAGTACCCAAGGAGCTGAAGGGGTAGCAGCCCCATAGGAGG
AAGAACAATATGAAATAACCCGTATCCCCAGAGATCCCAGGGACTAAACT
ACCAAACAAAGAAGAAACATGGGGTGACTCATGGCTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_i03.g1 MSMg01no065_i03.g1 CHROMAT_FILE:
MSMg01no065_i03.g1 PHD_FILE: MSMg01no065_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:02 2005
         (526 letters)



>mm_chr6_46418798_46419726
          Length = 929

 Score =  992 bits (513), Expect = 0.0
 Identities = 524/529 (99%), Gaps = 3/529 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actggggaaaaagaagaagaaaaagtgaaaaaagtaaaggaaagataaagggagagagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actggggaaaaagaagaagaaaaagtgaaaaaagtaaaggaaagataaagggagagagaa 260

                                                                       
Query: 61  aaatcacctaatacatttgtacttctgttataattaaggtgataacaccagttcgagtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 aaatcacctaatacatttgtacttctgttataattaaggtgataacaccagttagagtct 320

                                                                       
Query: 121 cttgaatatgttcaccctgctatcttaaggattttctttccctaaaaagttatttctagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgaatatgttcaccctgctatcttaaggattttctttccctaaaaagttatttctagc 380

                                                                       
Query: 181 taattatcctcactaaggaatgtaatctgtcagcctgtcttgctaatgttcctcacaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taattatcctcactaaggaatgtaatctgtcagcctgtcttgctaatgttcctcacaatg 440

                                                                       
Query: 241 gaggctgctccagtgaatagaaactgacttaatggagaaaattagatacttagaggagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggctgctccagtgaatagaaactgacttaatggagaaaattagatacttagaggagtt 500

                                                                       
Query: 301 gattatttggggattttcttccaaggtgaaaaatgtcatctatcccatcaagaaattttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gattatttggggattttcttccaaggtgaaaaatgtcatctatcccatcaagaaattttt 560

                                                                       
Query: 361 aacagggcctgctgg---gagaagaagggctccaatctctcacagggaagccactgagat 417
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacagggcctgctggagggagaagaagggctccaatctctcacagggaagccactgagat 620

                                                                       
Query: 418 atacactattgttacctttcttatgtgcctcatcttcccatgcttgggaatgacagggat 477
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acacactattgttacctttcttatgtgcctcatcttcccatgcttgggaatgacagggat 680

                                                            
Query: 478 taagggtcaaggtgagtacccaaggagctgaaggggtagcagccccata 526
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taagggtcaaggtgagtacccaaggagctgaaggggtagcagccccata 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 929
Length adjustment: 10
Effective length of query: 516
Effective length of database: 919
Effective search space:   474204
Effective search space used:   474204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)