BAC Information

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BAC

Clone NameMSMg01-065M04
Chromosome6 (Build37)
Map Location 74,838,309 - 74,838,683
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143, EG668145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065M04.T7 (MSMg01no065_m04.b1)MSMg01-065M04.TJ (MSMg01no065_m04.g1)
ACCAG290893AG290894
length694694
length of high quality
(start - end)
510 (44 - 553)428 (72 - 499)
definitionCHROMAT_FILE: MSMg01no065_m04.b1 PHD_FILE: MSMg01no065_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:21 2005CHROMAT_FILE: MSMg01no065_m04.g1 PHD_FILE: MSMg01no065_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGTACATAAAATCTACTCTTTTCTTGAAAGTAATATTTAATTGAAAA
TTCAATTCAATGATTTGTGGCTATTTTTTTAAAAACTGGTTTATCAATTA
ATAGCAAATCATTTTTGTTGTTATAGTTTCTGTTCAAGTTATTGCAGCTG
CGTGGATGAGAAGCGTCTCTGCTAGACAACCGGCGACCTTCCTGGTGAGA
GCACAGGGATCCACCCGGCCCGAGAGGTTTCTGCCTCAGGCTCCACTAGA
GCCACCTTGGTTCCAGGACTCCACTGAGGGCAGGCTGCACGGGTGAGGGT
GTGGAATACAGAGGCCAGCAGTTTCTGGGAAGGCGAGAGCCAGAGAGCTT
GTGAGGCGGCACCATTTTCAGCTCCAGACCGGCCACCTTCCTGGCCGAAG
CAACACAGCTTCTGGGAAAGATCCTGTTTTGGGCCTTCATCTTCAGCCAG
GAGGATGTCCAAACACCAGATAACTGTGCACCTTCCCTGAAAGAGGAGAG
CTTGCCTGCAGAGAATGCTCTGACCACTGAAACTCAGAGGAGAGAGCTAG
TTTCCCACATCTGCTGATAGAGGGTAACAAATTCCCCAGAGGAACAATCT
TTTAACCAAGACAACTATAACAACTAACTCCAGACATTGCCCGA
CATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTAAAACTAGTAATTAATAAGGTATTATA
ATAGGACTGTATTAAGTCCTTACTGATGTAAAACTGCAATGAGTACTCTG
CTTGTCTTCAAGTATCACCAGTTAATGGCTTCTGAGATAGAAAACAGGCA
TTACAATTTAGAACACAGTCCAAGAGGTTGTAAAAAAAATTAACCGTAGG
TAATAAAAAGGGAACTAATGATAATAAAGGTACAAGGGCAGAAGATAAAA
TATTATCTAGGTTTACACATACAAAACTTCAACAATTACATAATTATGGT
CTTTAATTCTCCATGAACCTGTAAAGCTGATGACAGATAATGAATGGATA
CATATGAATGAATAATGAATGGATACATATGAATGAATAATGAATGAATA
CATATAAATGTGTCTGTTGTAAACTTCTTATTTAATTTATGATTTANATT
TAAATTTAAATTTTAAAATTTATGGCTTTGGAAATTTTCTCAAAGGAGAA
ACTTTTTGGGTAAAAAGGGGAGGGTTTGGGAAAAAACCCCGGGGGGGGTC
TTATTTTCCTCCCTAAAAAAATGGGTCCTTTAAAACACCCCTTGGTGAGC
ACTGTGGANTTGGTTGCACACAACCCATATTTTCCTTTTTCGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_m04.b1 MSMg01no065_m04.b1 CHROMAT_FILE:
MSMg01no065_m04.b1 PHD_FILE: MSMg01no065_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:21 2005
         (510 letters)



>mm_chr6_74838305_74839215
          Length = 911

 Score =  663 bits (343), Expect = 0.0
 Identities = 367/375 (97%), Gaps = 2/375 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtacataaaatctactcttttcttgaaag-taatatttaattgaaaattcaa 62
           ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 379 ggaattctgtacatagaatctactcttttcttgaaagttaatatttaattgaaaattcaa 320

                                                                       
Query: 63  ttcaatgatttgtggctatttttttaaaaactggtttatcaattaatagcaaatcatttt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttcaatgatttgtggctatttttttaaaaactggtttatcaattaatagcaaatcatttt 260

                                                                       
Query: 123 tgttgttatagtttctgttcaagttattgcagctgcgtggatgagaagcgtctctgctag 182
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 259 tgttgttatagtttctgttcaagttattgcagctgcgtggataagaagcgtctctgatag 200

                                                                       
Query: 183 acaaccggcgaccttcctggtgagagcacagggatccacccggcccgagaggtttctgcc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 acaaccggcgaccttcctggtgagagcacagggatccacccggcccgagaggtttctgcc 140

                                                                       
Query: 243 tcaggctccactagagccaccttggttccaggactccactgagggcaggctgcacgggtg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 tcaggctccactagagccaccttggttccaggactccactgagggcaggctgcacgggtg 80

                                                                       
Query: 303 agggtgtggaatacagaggccagcagtttctggga-aggcgagagccagagagcttgtga 361
           ||||||||||||||||||||||||||||||||| | |||||||||||||||| ||| |||
Sbjct: 79  agggtgtggaatacagaggccagcagtttctggtacaggcgagagccagagaccttctga 20

                          
Query: 362 ggcggcaccattttc 376
           |||||||||||||||
Sbjct: 19  ggcggcaccattttc 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 911
Length adjustment: 10
Effective length of query: 500
Effective length of database: 901
Effective search space:   450500
Effective search space used:   450500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)