Query= MSMg01no065_n23.b1 MSMg01no065_n23.b1 CHROMAT_FILE:
MSMg01no065_n23.b1 PHD_FILE: MSMg01no065_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:30 2005
(529 letters)
>mm_chr6_112667842_112668771
Length = 930
Score = 961 bits (497), Expect = 0.0
Identities = 518/527 (98%), Gaps = 5/527 (0%)
Strand = Plus / Minus
Query: 6 gaattccacatactcccc---ctacccatgggaactgccagaagggacttcactgtcagt 62
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gaattccacatact--ccaagctacccatgggaactgccagaagggacttcactgtcagt 673
Query: 63 ccgagacctcctgacctcttaaagttgatctgccagcatactgttgtcccatcctttggg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ccgagacctcctgacctcttaaagttgatctgccagcatactgttgtcccatcctttggg 613
Query: 123 actggccaaatggctattgcagtcctttgctgacaactcctttctgtgcaaactgtccca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 actggccaaatggctattgcagtcctttgctgacaactcctttctgtgcaaactgtccca 553
Query: 183 ggcaaatcacaaagctgttccttgaagtggaaccgccagattgcactttccttccctgat 242
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 552 ggcaaatcacaaagctgttccttgaagtggaaccaccagattgcactttccttccctgat 493
Query: 243 ggaagtgggtcgaggctagctctgctgcccaggtcctcgttccaggcagtgtgactgttt 302
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 492 ggatgtgggtcgaggctagctctgctgcccaggccctcgttccaggcagtgtgactgttt 433
Query: 303 acatggtttggcaataggtttgcttctgattgcttcagagtggctggtctgttttgtttg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 acatggtttggcaataggtttgcttctgattgcttcagagtggctggtctgttttgtttg 373
Query: 363 ctttgctttctctcttcccccaaattatgacaggaaaaacaaactgaaaccaccctagga 422
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ctttgctttctttcttcccccaaattatgacaggaaaaacaaactgaaaccaccctagga 313
Query: 423 aattgctggttgcctgtccccatgtgatgctaactgttgccctcttctgggtatcatttc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aattgctggttgcctgtccccatgtgatgctaactgttgccctcttctgggtatcatttc 253
Query: 483 tctaccttatgaccaaaatgcccgtcctatagagtgtctgattggat 529
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tctaccttatgaccaaaatgcccgtcctatagagtgtctgattggat 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 930
Length adjustment: 10
Effective length of query: 519
Effective length of database: 920
Effective search space: 477480
Effective search space used: 477480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no065_n23.g1 MSMg01no065_n23.g1 CHROMAT_FILE:
MSMg01no065_n23.g1 PHD_FILE: MSMg01no065_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:30 2005
(520 letters)
>mm_chr6_112517661_112518580
Length = 920
Score = 967 bits (500), Expect = 0.0
Identities = 515/520 (99%)
Strand = Plus / Plus
Query: 1 actgcgaccacagaactctctaacatcagatgataatgtccatcgtctctgtcttttctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgcgaccacagaactctctaacatcagatgataatgtccatcgtctctgtcttttctt 260
Query: 61 ggtgtgagaatcagtgagaaaaaagggaaggtgggctgtgatgtgggctgaactagggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgtgagaatcagtgagaaaaaagggaaggtgggctgtgatgtgggctgaactagggag 320
Query: 121 taggaaggggctgtgagctgtgggtctttagcaagcatctgacatggcctcacggtccta 180
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 taggaaggggctgtgagctgtgggtctttagcaagcatctgacatggcctcgtggtccta 380
Query: 181 ggctgcctctcttctttgaggaaagaatggagatctcttagtaaaagaattgctgaagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctgcctctcttctttgaggaaagaatggagatctcttagtaaaagaattgctgaagac 440
Query: 241 agatgacatcaaattatcactctgtggctgaacacctaatgatgatggacagccagcttc 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 agatgacatcaaattatcactctgtgactgaacacctaatgatgatggacagccagcttc 500
Query: 301 tcattctggagcaagtcattatcttactgctcacggcagcctgttcagggaatgagccca 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 tcattctggagcaagtcattatcttactgctcacggcagtctgttcagggaatgagccca 560
Query: 361 tcaaagacaacagaatgtggcccaggaaggctaagaaaccctcacctaaaacagtcttcc 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 tcaaagacaacagaatgtggcccaggagggctaagaaaccctcacctaaaacagtcttcc 620
Query: 421 taagatcttgtcgtagcagtaaaagctcactagatgctgtccagtctttggatatgaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taagatcttgtcgtagcagtaaaagctcactagatgctgtccagtctttggatatgaaaa 680
Query: 481 catttcaaatttgagaatcttctgaggaaaaaagagacag 520
||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catttcaaatttgagaatcttctgaggaaaaaagagacag 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
