BAC Information

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BAC

Clone NameMSMg01-065O08
Chromosome6 (Build37)
Map Location 49,892,124 - 49,892,372
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210, Npy
Downstream geneLOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3, Cycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065O08.T7 (MSMg01no065_o08.b1)MSMg01-065O08.TJ (MSMg01no065_o08.g1)
ACCAG290997AG290998
length661666
length of high quality
(start - end)
249 (74 - 322)172 (82 - 253)
definitionCHROMAT_FILE: MSMg01no065_o08.b1 PHD_FILE: MSMg01no065_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:31 2005CHROMAT_FILE: MSMg01no065_o08.g1 PHD_FILE: MSMg01no065_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTATTTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAAA
TCCGCGGAATTCCAGTTGTACATGCTTATAAACTGCCTTGTGGGTGCGGG
GAATCCAATTTGGGTCCACCTCTCAATCACAGACCCATCCCTCCATCCCC
TCTAGCTGCATCCTTGAAAAGGCAGACTGAGCCCATAGTAAGGGTCAGTG
GCCGTCCAAGGCAGGAATGTTCGATTCAGGTCGCTGAGAGCTTTTCTGCT
GTGAATAACTGAGAAGGAAGTAAAGATTAAATCTTTAGCTCATCCCCAGC
CTAACTTGTTCCAAGGCCATGGAATACATTAATGTAATCTTTCGTCTGAG
AGCCCTGCTTTGAATTTACAGGGTAATATTGCAAGGAGATAATCGGGAAG
CTCACAGCCTAGTTATTTCCCGATCCATTGACAAGCCGAGCGTTTCCCAG
AGTTTAGTGTTGCGCTGATGTGCCTCTTTTACCATGCGCGTTCTGGGTTG
CTCTTCTCTGCTGGTAGGCCTTACAATATGTTTTTTCTTTTTTCCCCCCT
TTCTTTGTTTTTTTATTGTCGCACCACTGTGAACTTGTTTTGCCCCCTCC
TAGTGACCATCTCACTGTGATGGCTTTTGGTTATAGCTCTTTATGTCTAT
GCTTTTCCCCG
GTTATTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGTTTCTCTGGTCAGA
AAGCCTCTCTGAATTGACAAGTCAGGTCCAGTGTCAGTGAGAGACACTAT
CTCAGAAAGTACGGGTGGAGAGAGGCAGAGGATAGGTGTCGGTCTGTTGC
TATGATAAACACCATGACTAAAGAGTTTATTACATCTTACAGGACACAGT
CCCTCAATGAAGGAAGTCAGTCTGGAGCTCAAGGAAGACCTGAGGCAGGT
ACCATGGAGACTTGATGGCTACTGGCTTTCTCAGCTTGCTTTGGAATCTG
CCCTCTATCCACAGTGGACTGGGACTCCCATATTACCCATCGATCATAAA
ATAAAAAAGTCCCTGAACAAAGACATGCTTCAGTTCGATCTGTTGGAAGC
AATTTCTCAGCTCTGCTTCTCTCCTCCAATAAATGTTTGTCTAGTTTTGT
GACATATTGCCTTACTTTACCTTTCTCGAGGAAGACTTGTGATGCTGACC
TTCGTTGTTGCTCAATGTGCCCGTGGTTTGTTTGTACCTGCACTAACATT
TTGTTCTCACGCTTATTTGACATTGATACCTGCCTGTACTCTCTGATTAT
TTTCTCCCTTTCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_o08.b1 MSMg01no065_o08.b1 CHROMAT_FILE:
MSMg01no065_o08.b1 PHD_FILE: MSMg01no065_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:31 2005
         (249 letters)



>mm_chr6_49891924_49892572
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcttataaactgccttgtgggtgcggggaatccaatttgggtccacctctcaatcacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 gcttataaactgccttgtgggtgcggggaatccaatttgggtccacctctcaaccacaga 260

                                                                       
Query: 61  cccatccctccatcccctctagctgcatccttgaaaaggcagactgagcccatagtaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccatccctccatcccctctagctgcatccttgaaaaggcagactgagcccatagtaagg 320

                                                                       
Query: 121 gtcagtggccgtccaaggcaggaatgttcgattcaggtcgctgagagcttttctgctgtg 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 gtcagtggccgtccaaggcaggaatgttcgattcaggtcactgagagcttttctgctgtg 380

                                                                       
Query: 181 aataactgagaaggaagtaaagattaaatctttagctcatccccagcctaacttgttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataactgagaaggaagtaaagattaaatctttagctcatccccagcctaacttgttcca 440

                    
Query: 241 aggccatgg 249
           |||||||||
Sbjct: 441 aggccatgg 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)