BAC Information

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BAC

Clone NameMSMg01-065O18
Chromosome6 (Build37)
Map Location 34,946,414 - 34,946,728
singlet/doubletsinglet
Overlap genenone
Upstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik
Downstream geneCnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312, LOC100039327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065O18.T7 (MSMg01no065_o18.b1)MSMg01-065O18.TJ (MSMg01no065_o18.g1)
ACCAG291017AG291018
length673669
length of high quality
(start - end)
105 (137 - 241)315 (74 - 388)
definitionCHROMAT_FILE: MSMg01no065_o18.b1 PHD_FILE: MSMg01no065_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:33 2005CHROMAT_FILE: MSMg01no065_o18.g1 PHD_FILE: MSMg01no065_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGGTATTCCGTTTTCTTGTGGACCTGAGTTCCCATCCTCA
GAACAGACATAAAAAGCTGAGCGTGACCATGTGAGCTTTTCAGACCTCAG
CCACTTGCAATGCAGAGACAGGCTGATCATTGGGACTTGGGCTCCAGGTT
CTGTGAGAACGCTGTCTTAAGTGAATAAGGCAGAGAGTCATAGAACAGGA
CACCCGGCCTTCTCCTCTGGGTTCTGTATGGGGATGGGCCACATGGCTAC
ACATGGGTTTTTTTCCAGGGACATTATAAATCCATGGAATAACTTAAGAT
AGGAAAATAAAATCATCAAATTCACATTTTTATTCTTACTACTTCTAAAG
AATATATTAGAGATCCAATGAAGAGACTGTGGCAGCTTAGACTATAGGTG
GTTGAAGATATGATCTAAACTAGGTTAGACAAGATTTGTGGGGAATTACT
TGAATCAGAAAATGGAGGCAGTATCATTCATTCTGAAAGTTTTAAAATAT
TGTGAGGGGAGCTTTGAATAAATGAAGTATCTGGGAGATATCTGGATTTT
TTTGGTCTTCCATTCTCCATCATGTGGGCTGTCCTTCTGAAGTAGTTTTC
AGACGGATCTATTTCGTGTCCGG
TTTACAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCATCTGGCGGGAGAGAAAGACATTAA
TCAAGGAAGTGTGAGGACCACTGCACGCTCTCGGCTGAGATGAGGGCTAG
AGTTCTCTCTCTTGAACTGGGTCGCAGCCTCAAGTCGCGGACCTGGATGG
GAGGGTGCTGATGAACTTGCCAATAGTAAAAGGACCCAAAAATGAATTCA
AAATTAAAATCGTTGTGAATCAGAGGAATTTCCATTGGTGTTCACCGTCC
TTGGCTCCGAGAGTAGAACATGTCACTTTGCACTGATGCCATCATGCCAG
CCACTGAATGCTGACTGAAGTGCCTGGCTGAGATTCAAAAAGTGAAGGCT
GTTTACTGCACACACAGGGGTCTCTGCTCTTACAGAAACACGGTAGCTTA
ACTATGGAAAGGACGTTAGCATTTCCCTACCATTGCTCCTCAGCACACAA
GCATCAAATTCCCAGACCTTTGGATTGTATTGTGTTAGAGAGATTGATTT
TAAAAGCTGCTACTTGAGAGGCCAGGCGAAATAGCTAAGAAGATAAAGGC
AGCTAACACCCTGAGTTCAGTCACAAAGAAGGCTCCACACAGAGGAAAGA
GAAAATTAACTCTTAGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_o18.g1 MSMg01no065_o18.g1 CHROMAT_FILE:
MSMg01no065_o18.g1 PHD_FILE: MSMg01no065_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:33 2005
         (315 letters)



>mm_chr6_34946214_34946928
          Length = 715

 Score =  555 bits (287), Expect = e-162
 Identities = 308/315 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatctggcgggagagaaagacattaatcaaggaagtgtgaggaccactgcacgctctcg 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ccatctggcgggagagaaagacattaatcaaggaagtgcgaggaccactgcacgctctcg 260

                                                                       
Query: 61  gctgagatgagggctagagttctctctcttgaactgggtcgcagcctcaagtcgcggacc 120
           |||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct: 261 gctgagatgagggctagagttctcgctcttgaactgggttgcagcctcaagtcgtggacc 320

                                                                       
Query: 121 tggatgggagggtgctgatgaacttgccaatagtaaaaggacccaaaaatgaattcaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggatgggagggtgctgatgaacttgccaatagtaaaaggacccaaaaatgaattcaaaa 380

                                                                       
Query: 181 ttaaaatcgttgtgaatcagaggaatttccattggtgttcaccgtccttggctccgagag 240
           ||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||
Sbjct: 381 ttaaaatcgttgtgaatcagaggaatttccattggtgttcatcgcccttggctccaagag 440

                                                                       
Query: 241 tagaacatgtcactttgcactgatgccatcatgccagccactgaatgctgactgaagtgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagaacatgtcactttgcactgatgccatcatgccagccactgaatgctgactgaagtgc 500

                          
Query: 301 ctggctgagattcaa 315
           |||||||||||||||
Sbjct: 501 ctggctgagattcaa 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)