BAC Information

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BAC

Clone NameMSMg01-066B09
Chromosome6 (Build37)
Map Location 82,534,048 - 82,688,529
singlet/doubletdoublet
Overlap genePole4, LOC100043412, Hk2
Upstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198, Tacr1
Downstream geneEG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066B09.T7 (MSMg01no066_b09.b1)MSMg01-066B09.TJ (MSMg01no066_b09.g1)
ACCAG291143AG291144
length702732
length of high quality
(start - end)
256 (66 - 321)297 (72 - 368)
definitionCHROMAT_FILE: MSMg01no066_b09.b1 PHD_FILE: MSMg01no066_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:46 2005CHROMAT_FILE: MSMg01no066_b09.g1 PHD_FILE: MSMg01no066_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,688,274 - 82,688,529)(82,534,048 - 82,534,344)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAATGCGCGGAAT
TCACACTGCTCTCCCCTATCTGTTTCCCAGCGATAAGGACGGAATCCAGA
AGGCCTACCAGATCCTGGTGCGCCTGGGTCTGAGCCCGCTGCAGGAGGAC
TGTGTGGCCACGCACCGAATCTGCCAGATTGTGTCCACGCGCTCAGCCAG
CCTGTGTGCAGCCACCCTGGCCGCGGTGCTATGGCGGATCAAAGAGAACA
AGGGCGAGGAGCGACTCCGCTCCACCATCGGCGTGGATGGCTCTGTCTAC
AAGAAACATCCCCAGTGAGTGAGCAGGCCGGGGCTGGGAACAGAAGGGTC
CCCTGGAGACTCCATGAGGCAGCTCTGTATTGCTTTCCAGACAGCATAAG
TGTTCTCCAGTCACTTGGTATGAGTGGGATTGCTTTCTGAAGGCAGCTGA
TGGCTTGCCCTCTGTTTAGAGCTCCTGGTTGCTGAGTCCTTGGCTTGCTG
CCTCCTCTTCCGCTCTGTTTTGAGACAGGCTTGTCCTCTAGTCCCTCCCA
GGCTGGCCTTAGACTTCATCTGTGCCCACGTGTGAACTTAACTTCTGATC
CTTCTTGTCTGTCCCCACCTCTCCAGTTCTAGGAACACAGGTGTGTACCT
CCTTTCTGCATAGTTTGCCATTGAATGCTCTGGGCATGCTATGCTAGCCT
GT
GATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTCAAGGGAGGCTCCTTTCTCTGTGATA
ACTCCAGCTTGTGTCAAGTTGACACACAAAACCAGCCAGTAGAGGGAGGG
AGGGAGGAGAGAGGAGTTCCTTTCTCTGGGCCTGTGCATTCTGTCCCTCA
GGGCATCATTTCCAAGACATCTACTTCCTACTCACCTGTCACCTTATTGA
TGTGACTTTCCTCAAAACCCTACCTTAATAGCACCACTTCCTGCCCCTGC
TCTCATTGCCTCTTCCTCTCTCCCTGTAGTTTACATCTATCTATGTATCT
ATCTATTTGTGTGCGTGTGTGCGTGTGTGTGTGTGCGTGAGAGACTGATA
GAGAGCGATACTCAGTCATCTCTTTTTTTCACACTCCTATCATCTCTTCC
CTCTTCACTCATCACTCCCCCTTCCTTCCCTCCTTGTTATCACTTGGATC
TCTCGCTTGTGTCCTTCTCTGCTTTTATCCCGGTATCGTCGGTCTATTTT
TCTTACTTTACTTTTGTCGTCCGCTATTTTTTTTTTTTTGTTTTCTTCAT
CACGCCCTCGCTCGTATCCTCTGCCGTTTATCACAACTCCTGCTCTCTTT
TTTATTTCTTCTTTCCTCTCGCTTCTCCTTTTTATTCCTCCTTTTTTTCT
TCTTCTTCTCGTTCTTTTTTCTCTTTTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_b09.b1 MSMg01no066_b09.b1 CHROMAT_FILE:
MSMg01no066_b09.b1 PHD_FILE: MSMg01no066_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:46 2005
         (256 letters)



>mm_chr6_82688074_82688729
          Length = 656

 Score =  480 bits (248), Expect = e-140
 Identities = 254/256 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatctgtttcccagcgataaggacggaatccagaaggcctaccagatcctggtgcgcct 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 456 ctatctgtttcccagcgataaggacggaattcagaaggcctaccagatcctggtgcgcct 397

                                                                       
Query: 61  gggtctgagcccgctgcaggaggactgtgtggccacgcaccgaatctgccagattgtgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gggtctgagcccgctgcaggaggactgtgtggccacgcaccgaatctgccagattgtgtc 337

                                                                       
Query: 121 cacgcgctcagccagcctgtgtgcagccaccctggccgcggtgctatggcggatcaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 336 cacgcgctcagccagcctgtgtgcagccaccctggccgcggtgctgtggcggatcaaaga 277

                                                                       
Query: 181 gaacaagggcgaggagcgactccgctccaccatcggcgtggatggctctgtctacaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gaacaagggcgaggagcgactccgctccaccatcggcgtggatggctctgtctacaagaa 217

                           
Query: 241 acatccccagtgagtg 256
           ||||||||||||||||
Sbjct: 216 acatccccagtgagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space:   159809
Effective search space used:   159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no066_b09.g1 MSMg01no066_b09.g1 CHROMAT_FILE:
MSMg01no066_b09.g1 PHD_FILE: MSMg01no066_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:46 2005
         (297 letters)



>mm_chr6_82533848_82534544
          Length = 697

 Score =  551 bits (285), Expect = e-161
 Identities = 294/297 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcaagggaggctcctttctctgtgataactccagcttgtgtcaagttgacacacaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcaagggaggctcctttctctgtgataactccagcttgtgtcaagttgacacacaaaa 260

                                                                       
Query: 61  ccagccagtagagggagggagggaggagagaggagttcctttctctgggcctgtgcattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagccagtagagggagggagggaggagagaggagttcctttctctgggcctgtgcattc 320

                                                                       
Query: 121 tgtccctcagggcatcatttccaagacatctacttcctactcacctgtcaccttattgat 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtccctcagagcatcatttccaagacatctacttcctactcacctgtcaccttattgat 380

                                                                       
Query: 181 gtgactttcctcaaaaccctaccttaatagcaccacttcctgcccctgctctcattgcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgactttcctcaaaaccctaccttaatagcaccacttcctgcccctgctctcattgcct 440

                                                                    
Query: 241 cttcctctctccctgtagtttacatctatctatgtatctatctatttgtgtgcgtgt 297
           |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 441 cttcctctctccctgtagtttacatctatctatgtatcgatctatttgtgtgtgtgt 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)