BAC Information

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BAC

Clone NameMSMg01-066J23
Chromosome6 (Build37)
Map Location 106,407,634 - 106,408,110
singlet/doubletsinglet
Overlap geneCntn4
Upstream geneLOC100043716, LOC100043350
Downstream geneIl5ra, Trnt1, Crbn, Ppia-ps6_1128.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066J23.T7 (MSMg01no066_j23.b1)MSMg01-066J23.TJ (MSMg01no066_j23.g1)
ACCAG291551AG291552
length734735
length of high quality
(start - end)
476 (70 - 545)270 (73 - 342)
definitionCHROMAT_FILE: MSMg01no066_j23.b1 PHD_FILE: MSMg01no066_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:28 2005CHROMAT_FILE: MSMg01no066_j23.g1 PHD_FILE: MSMg01no066_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCGGAAAGCGGAATTCTC
AACTGAGGATCTCGAATTGTCAAGAAGCACCTAAAGAAATATTCACATCC
TTAGTTATCAGGGAAATGCAAATCAAAACAACCCTGACATTCCACCTCAC
AGCAGTCAGAATGACTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGT
GACGATGTAGAGAAAGTGGAACAACTCCTCCATTCTTGGTGACATTGCAA
GCTGCTACAACCACTGTGGAAATCAGTCTGGCTATTCCTCAGAAAATTGA
TCAGAGTATTACCTGAAGACCCAGCTATACCACTCCTGGGCATCTACCCA
AAAGATGCTCCAAAATATATAGTACTTCTTCTTAGTTTAAAAAGGTACTA
ACATAAGAATGGAGAGAAGAGAGAAGGGGAGGGGGGAAGTAAAAGGGAAA
ACTGATCAAAGCTAATCGCTAAGACTCTGCATGTGAATGTTTAATTCTCC
AAAATTCTCTGCAGTCCATCGTTTCTCTTGACATATCCTTTGTGAAGTTA
CCATAGGAAATGAAGATCCAAGATAAGTCTCCCAAATTTTTAGAGTCCAC
AGAGCAGCTGAACTGAAGCAAGGCATCCGAGAGATGACAGAGAATGGGGA
AGAGTCAGCAGACCTACTTATCCTAAATTTCCTCAAAGGGGAATAGCAAG
TTGTCATTATCAACCCTAGGGTGATTCCTTCTTG
ACGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTGCATTAAAAATCTAATTATTGAACTCTGTTGGGTCATT
ATTTGTATGGTCTTTCTTCCTCTCTTCCTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTCCCTCCCTCCCTCCCTCCC
TCCCTCTTTCCCTCCCTCTTTCTTTTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTCTCTCTTTCTCTCTCTCTTTCTCTCTTTCTCTCTCTCTTTCTTT
CTTTCTTTCTTTCTTTTTTTCTTTACTTTCATAACATCTATCTTTCTTTC
ATACTTTACTTCTTTCTTTCTTTCTTTCATTCAATCTTTCTTTCTTTCTT
TCTTTCGATTTTGGAATAGTGCTCATCTATAAAGCCTGGCCTGCACTGGT
ACTACCCTTTTTGCCTCAGCTTCTAGAGTGTTAAAATAAAAGGATTGTGC
AACTACTTGGCCACTGTCCTAATATCTATACTGTAACACTCTAACTAATT
CTTGAGCATGTGGTGTTTGAGTTGTAAAAGAAGAAGTCAAGAAAAAATGA
ACATGTTGTGTGAACACTCACACACACACCCAGTTATTGAGCACCCAGGC
AACGCTTAATTTGAAATACTCTCCTAAATCTACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_j23.b1 MSMg01no066_j23.b1 CHROMAT_FILE:
MSMg01no066_j23.b1 PHD_FILE: MSMg01no066_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:28 2005
         (476 letters)



>mm_chr6_106407435_106408310
          Length = 876

 Score =  891 bits (461), Expect = 0.0
 Identities = 473/477 (99%), Gaps = 1/477 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaagaagcacctaaagaaatattca-catccttagttatcagggaaatgcaaatcaaaa 59
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 200 tcaagaagcacctaaagaaatattcaacatccttagttatcagggaaatgcaaatcaaaa 259

                                                                       
Query: 60  caaccctgacattccacctcacagcagtcagaatgactaagatcaaaaattcaggtgaca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caaccctgacattccacctcacagcagtcagaatgactaagatcaaaaattcaggtgaca 319

                                                                       
Query: 120 gcagatgctggtgacgatgtagagaaagtggaacaactcctccattcttggtgacattgc 179
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 320 gcagatgctggtgacgatgtagagaaagaggaacaactcctccattcttggtgacattgc 379

                                                                       
Query: 180 aagctgctacaaccactgtggaaatcagtctggctattcctcagaaaattgatcagagta 239
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aagctgctacagccactgtggaaatcagtctggctattcctcagaaaattgatcagagta 439

                                                                       
Query: 240 ttacctgaagacccagctataccactcctgggcatctacccaaaagatgctccaaaatat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttacctgaagacccagctataccactcctgggcatctacccaaaagatgctccaaaatat 499

                                                                       
Query: 300 atagtacttcttcttagtttaaaaaggtactaacataagaatggagagaagagagaaggg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atagtacttcttcttagtttaaaaaggtactaacataagaatggagagaagagagaaggg 559

                                                                       
Query: 360 gaggggggaagtaaaagggaaaactgatcaaagctaatcgctaagactctgcatgtgaat 419
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gagggggggagtaaaagggaaaactgatcaaagctaatcgctaagactctgcatgtgaat 619

                                                                    
Query: 420 gtttaattctccaaaattctctgcagtccatcgtttctcttgacatatcctttgtga 476
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtttaattctccaaaattctctgcagtccatcgtttctcttgacatatcctttgtga 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)