AATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAATATCTGTGATTTTAAATTATTTATTATTGTATTAAATACATTT
TATTTATTGTTATTGCATGTGTATGCTATGTGCATATGTTATGTTTGTAT
TGTATGCTTGTGGGGGCAGTGTACATGTATAAGGAACACATGAAGAAGCC
ATAAGACACCTTCTAGAACCTGTTCTCTTCTTCTACTTCAACATTCATTC
TAGGAGACAATCTCAGGCGACCAGGATTACACAACAAGGCACTTTTACCT
GCTGCACAGGCTCACTGGTTCTCACATCCCAGCAATTATTTGAAAGTACT
GTCTGTATTCCAAGTTCATTGTTAAACTCCTTTGTTTTTCTATCCTCAAC
AGGTAAAAGGCCCTACCTAAAACATTTTGGTCAAACATGAGAGTGTAAAA
TATGAAGTAAGTGCTTAATAAATACTAGACCTCTAGATTAGACAAAAAGC
TCATGACTGGAACACTTATACACCTGCCATATACTTTTGAATACATTCTA
TAGAGTGTTTTCTGCAAACACACACAAACACAACCACATGTAGATGTGCA
TCCCCCCTGCCCCTTGTTTGTTTGTTTGTTTGTGTGTGTGTGTGAGTTGT
GTTTGGGAAGAAAAACAATTTTTGGGCATTACTGAACTTTATACTGATCT
TGATCA

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTTGACAGCTGCGAATTGTTG
AGAGTGTTCCTCTCCTGAGACCTATGTTGGGGTGTTAAGCCAGTCTCACT
CATCCCCATCCAAAATAATTAAGGAAAAGTATCACCTTAGACATTGTGAC
ACATGTGTGGAAAGGAGAGATCTACCTACCTAGCCACATTGATGCATACT
CGTTTTGTCTTGAAGAATTCTATTCTGTGCACTTAAGATACAGTCATCAA
TTCTGACATGCATCAACACTGCACTAGCTATACATACTATCAGGTGGTGA
TAGATCACACATATGTGGGGGAGAGCACTCAAGAGTGCCCAGTAAACTCA
TTGTTGACACCTTGTTAGACTAGGTTGATTTAATTTTTTGAAGTTGGTGA
TCTATTTGAGGTGAGTAGATATTTACTTGATCATATCTCCCAGAACAAGT
TAGCACATCCTTCGTGATGCCTACAGCTACTTTTCCTTAATATAATTATC
CTCTCAGATTATTCTTTTGCATTACCTCATAAAATACATATACAAACTCT
TATCTGATGCATGATTCAAGCCCAGAATATGTGCTCTCATTTCTATAAAG
GGACTGGACTGTGAGTAAAACACTTGAAACAGCCAGCCTACTGTTTGTAT
TTTG

Query= MSMg01no067_d11.b1 MSMg01no067_d11.b1 CHROMAT_FILE:
MSMg01no067_d11.b1 PHD_FILE: MSMg01no067_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:15 2005
         (596 letters)



>mm_chr6_111058667_111059662
          Length = 996

 Score = 1123 bits (581), Expect = 0.0
 Identities = 584/585 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaatatctgtgattttaaattatttattattgtattaaatacattttatttatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 gaattcaaatatctgtgattttaaattatttattattgtattaaatacattttatttatt 770

                                                                       
Query: 65  gttattgcatgtgtatgctatgtgcatatgttatgtttgtattgtatgcttgtgggggca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 gttattgcatgtgtatgctatgtgcatatgttatgtttgtattgtatgcttgtgggggca 710

                                                                       
Query: 125 gtgtacatgtataaggaacacatgaagaagccataagacaccttctagaacctgttctct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gtgtacatgtataaggaacacatgaagaagccataagacaccttctagaacctgttctct 650

                                                                       
Query: 185 tcttctacttcaacattcattctaggagacaatctcaggcgaccaggattacacaacaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tcttctacttcaacattcattctaggagacaatctcaggcgaccaggattacacaacaag 590

                                                                       
Query: 245 gcacttttacctgctgcacaggctcactggttctcacatcccagcaattatttgaaagta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gcacttttacctgctgcacaggctcactggttctcacatcccagcaattatttgaaagta 530

                                                                       
Query: 305 ctgtctgtattccaagttcattgttaaactcctttgtttttctatcctcaacaggtaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ctgtctgtattccaagttcattgttaaactcctttgtttttctatcctcaacaggtaaaa 470

                                                                       
Query: 365 ggccctacctaaaacattttggtcaaacatgagagtgtaaaatatgaagtaagtgcttaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ggccctacctaaaacattttggtcaaacatgagagtgtaaaatatgaagtaagtgcttaa 410

                                                                       
Query: 425 taaatactagacctctagattagacaaaaagctcatgactggaacacttatacacctgcc 484
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 409 taaatactagacctctagattagacaaaaagctcatgactggaccacttatacacctgcc 350

                                                                       
Query: 485 atatacttttgaatacattctatagagtgttttctgcaaacacacacaaacacaaccaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 atatacttttgaatacattctatagagtgttttctgcaaacacacacaaacacaaccaca 290

                                                        
Query: 545 tgtagatgtgcatcccccctgccccttgtttgtttgtttgtttgt 589
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tgtagatgtgcatcccccctgccccttgtttgtttgtttgtttgt 245


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no067_d11.g1 MSMg01no067_d11.g1 CHROMAT_FILE:
MSMg01no067_d11.g1 PHD_FILE: MSMg01no067_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:15 2005
         (288 letters)



>mm_chr6_110979622_110980309
          Length = 688

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctcttgacagctgcgaattgttgagagtgttcctctcctgagacctatgttggggtgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tcctcttgacagctgcgaattgttgagagtgttcctctcctgagacctatgtcggggtgt 260

                                                                       
Query: 61  taagccagtctcactcatccccatccaaaataattaaggaaaagtatcaccttagacatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagccagtctcactcatccccatccaaaataattaaggaaaagtatcaccttagacatt 320

                                                                       
Query: 121 gtgacacatgtgtggaaaggagagatctacctacctagccacattgatgcatactcgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgacacatgtgtggaaaggagagatctacctacctagccacattgatgcatactcgttt 380

                                                                       
Query: 181 tgtcttgaagaattctattctgtgcacttaagatacagtcatcaattctgacatgcatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcttgaagaattctattctgtgcacttaagatacagtcatcaattctgacatgcatca 440

                                                         
Query: 241 acactgcactagctatacatactatcaggtggtgatagatcacaca 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acactgcactagctatacatactatcaggtggtgatagatcacaca 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)