Query= MSMg01no067_m13.b1 MSMg01no067_m13.b1 CHROMAT_FILE:
MSMg01no067_m13.b1 PHD_FILE: MSMg01no067_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:59 2005
(477 letters)
>mm_chr6_110892770_110893647
Length = 878
Score = 878 bits (454), Expect = 0.0
Identities = 472/478 (98%), Gaps = 1/478 (0%)
Strand = Plus / Minus
Query: 1 agaccacatttgttcttgttgtttgcttgttttatcttttgatttaatactcctcctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 agaccacatttgttcttgttgtttgcttgttttatcttttgatttaatactcctcctgtt 619
Query: 61 tatcacatataaatgttatatcaaatacagatagaggaagaaaatgattttcagattaca 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgtcacatataaatgttatatcaaatacagatagaggaagaaaatgattttcagattaca 559
Query: 121 gtgattaataaatgtgatacaattgtaaaatttattccttgaaggctttaccaatttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gtgattaataaatgtgatacaattgtaaaatttattccttgaaggctttaccaatttttt 499
Query: 181 tctttctgatgaagattgctatcctgcattc-caatctagtatttattagattctaggaa 239
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 498 tctttctgatgaagattgctatcctgcattctcaatctagtatttattagattctaggaa 439
Query: 240 tgaaacttcctaggatcagataaaattctactggtcttctccatgcataaatatgaagag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgaaacttcctaggatcagataaaattctactggtcttctccatgcataaatatgaagag 379
Query: 300 gaactgtaagttgaagtttacataaaaacagtcacacctgtattcaaaatttggcataat 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 378 gaactgtaagttgaagtttacataaaaacagtcacacctatattcaaaatttgacataat 319
Query: 360 taaatcatgttagactttcatagttgtaaagagttgggatgttgttggaatagagaatta 419
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 taaaccatgttagactctcatagttgtaaagagttgggatgttgttggaatagagaatta 259
Query: 420 gtagccatttattgcccatccctgtgtttaccatgagatccttttgactatcatgtat 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gtagccatttattgcccatccctgtgtttaccatgagatccttttgactatcatgtat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 878
Length adjustment: 10
Effective length of query: 467
Effective length of database: 868
Effective search space: 405356
Effective search space used: 405356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no067_m13.g1 MSMg01no067_m13.g1 CHROMAT_FILE:
MSMg01no067_m13.g1 PHD_FILE: MSMg01no067_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:59 2005
(510 letters)
>mm_chr6_110876908_110877817
Length = 910
Score = 942 bits (487), Expect = 0.0
Identities = 505/511 (98%), Gaps = 2/511 (0%)
Strand = Plus / Plus
Query: 1 ttttaatttcaaa-gcagttacaagaacataaatagatcatatatatggaaatattcaca 59
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttaatttcaaaagcagttagaagaacataaatagatcatatatatggaaatattcaca 260
Query: 60 acatgctaatgagaaaggaaaaatcccaccctgctttacaggtaattcactgaggaagaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatgctaatgagaaaggaaaaatcccaccctgctttacaggtaattcactgaggaagaa 320
Query: 120 tgttccagcaaaggccctctcagtggctctgcaattaaatgcaaggttttgcctaaagtg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttccagcaaaggccctctcagtggctctgcaattaaatgcaaggttttgcctaaagtg 380
Query: 180 tctgaaatatataagcacttaggagaaagagtgggatccataaacagaaggaaaaatgat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 tctgaaatatataagcacttaggagaaagagtgggatccataaacagaaggaaaa-tgat 439
Query: 240 gaaaaaatgaaacaggtttgtctttatttattaaagtttggaaaatgtggtgctgaaagg 299
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 440 gaaaaaatgaaacaggtttgtctccatttattaaagtttggaaaatgtggggctgaaagg 499
Query: 300 caggagaacttctcaccatgtacactgaaattccctaattcctggtcccttcaaagaagc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 caggagaacttctcaccatgtacactgaaattccctaattcctggtcccttcaaagaagc 559
Query: 360 cttcctcttcccacatccagggtctctcctgctatgtttagttttgaattgcttgatctg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttcctcttcccacatccagggtctctcctgctatgtttagttttgaattgcttgatctg 619
Query: 420 caagtaatcacagttacattgagttgatctttgaagtaaacatatcctgtcctgaagtct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caagtaatcacagttacattgagttgatctttgaagtaaacatatcctgtcctgaagtct 679
Query: 480 gcatatctcagctctccttctccatccacct 510
|||||||||||||||||||||||||||||||
Sbjct: 680 gcatatctcagctctccttctccatccacct 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
