BAC Information

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BAC

Clone NameMSMg01-068C05
Chromosome6 (Build37)
Map Location 15,262,350 - 15,262,598
singlet/doubletsinglet
Overlap geneFoxp2
Upstream geneLOC667797, Ppp1r3a, LOC100040568
Downstream geneMdfic, LOC100041116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068C05.T7 (MSMg01no068_c05.b1)MSMg01-068C05.TJ (MSMg01no068_c05.g1)
ACCAG292702AG292703
length719679
length of high quality
(start - end)
223 (36 - 258)249 (56 - 304)
definitionCHROMAT_FILE: MSMg01no068_c05.b1 PHD_FILE: MSMg01no068_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:28 2005CHROMAT_FILE: MSMg01no068_c05.g1 PHD_FILE: MSMg01no068_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAAA
ACCATACCCCACTTCTTAGGGTAGGCCTGGGATTAAATACCTTTTGCAGG
GAGGAATGTCTGGGAAGGGAGTTATTGGCTAAGCCCTCCAGGCCTCTAGG
TACCTCATTAGTGTGGAGAACTCTGTTTGGGGCCTAAATGACCTGTGCTC
ACATTTCTTTTATATGAGAAGCATTGCACACATTCTAAGTCAGGCGTCTG
GCAGGGAGCTGGTAGTCACCTAATCCTCAGGTGTGTGCCCACTGAATCTT
CTGGTTTCAACCTGTTCTTCCTTATCAAACCCCCTGGCATGTTTTCATGT
CCCTTATTTTTTCCCGCCCCCCTCCGGTAATTACTAAACGACCTTATATA
ACCGGTCCCAGGCCACAAAGAAAAAAAACAGCTCCTCGGCCGAGGCTGTC
CCCTGGTTTTGTGTATTCTTGACTCATATTAAATTATCTTGTGTTATCGC
GAAGTCTGTGCTCTAATTTTTTGTTCCGACGAATGATGTATGTTTTTATC
TTCTAAACTCCTTCTTGAAATCACGCCGGTTTTTTGGTATCATTAAAGTT
TGAATATTGTTGTTTTAACCGGTATTCTTGTTTCCACGCTTCCCTTGTCT
TAGATCACTTCTTTTTTATTCTTTTGTTCACTCTTCCTTTTCCGTCTTAT
ATTTGTCTGTGTTCTAACG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCTTCACTCTGCTATGACATCATCAAGAACCACACTCCTGGGAAAG
GGTGCTGATTGGCCAGCCTATTATTATCTATTCAGCCTTGGTCCAGTCAC
ACCAATTTCTATATTAAAGAATACAGAATCCAAGTAGTTCCCAAATAAAA
ACACTTTACCTTTAGCGAAAAGGAAAATTAGTGCTGAGTGGGAAAGTTAA
TAGATTTTCTATCTTGTGAAATGGAGTTGATTTTCTACTAAACTGCAACC
TTTGGATAACAATTGCAGTCTCAGATAATTTCCCTGTCTCCATATATTTT
TAACTCGCACCCCCCCACCGAACAGCTAGGAAATGATAAAGGGTGACAAC
TGCCCCACCTTTCAGGATTTGACCTTTTATGCCTTAGCTTCTGTGTTATC
CCAATCCATTATAAATAAGTGAGCCTTCTTATTTCCTTTCAGCACTTTTA
CTATTTTTTTTGGTCGCCCCGTCATTGTTCCCTTTCTAGTATGCCCTCTT
CCCGCTCCTCATCTGCTTCTTTCCTCCCATATGATTTTTAAGAGTGAGTT
TCTCCGCCCTCCCTGGGTCTCATACCTCCCTGTGTTTTCATGTCCCCCTG
GTTTTTCGATCTCCCTTTCCATAGTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_c05.g1 MSMg01no068_c05.g1 CHROMAT_FILE:
MSMg01no068_c05.g1 PHD_FILE: MSMg01no068_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:28 2005
         (249 letters)



>mm_chr6_15262150_15262798
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcactctgctatgacatcatcaagaaccacactcctgggaaagggtgctgattggcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcactctgctatgacatcatcaagaaccacactcctgggaaagggtgctgattggcca 260

                                                                       
Query: 61  gcctattattatctattcagccttggtccagtcacaccaatttctatattaaagaataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctattattatctattcagccttggtccagtcacaccaatttctatattaaagaataca 320

                                                                       
Query: 121 gaatccaagtagttcccaaataaaaacactttacctttagcgaaaaggaaaattagtgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatccaagtagttcccaaataaaaacactttacctttagcgaaaaggaaaattagtgct 380

                                                                       
Query: 181 gagtgggaaagttaatagattttctatcttgtgaaatggagttgattttctactaaactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtgggaaagttaatagattttctatcttgtgaaatggagttgattttctactaaactg 440

                    
Query: 241 caacctttg 249
           |||||||||
Sbjct: 441 caacctttg 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)