BAC Information

Click to search

BAC

Clone NameMSMg01-068E06
Chromosome6 (Build37)
Map Location 71,683,043 - 71,847,295
singlet/doubletdoublet
Overlap geneReep1, Mrpl35, Immt, Ptcd3
Upstream geneRpia, Eif2ak3, 1700011F03Rik, LOC232077, LOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034
Downstream geneRpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068E06.T7 (MSMg01no068_e06.b1)MSMg01-068E06.TJ (MSMg01no068_e06.g1)
ACCAG292800AG292801
length740753
length of high quality
(start - end)
281 (46 - 326)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no068_e06.b1 PHD_FILE: MSMg01no068_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:38 2005CHROMAT_FILE: MSMg01no068_e06.g1 PHD_FILE: MSMg01no068_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,683,043 - 71,683,223)(71,847,011 - 71,847,295)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGAATTGTTACGTTACTCTTTCTACGCCACACTCCAGTGGTATT
TTAGAAAAATCCTCCTAGTGTTCTCTCTTCATAAAGTTAATTTGTAAAAT
CATACACTTCAATTAAGAATGTCATATCCACATGCTTTATAAGTGTCATT
CTTGTTTGCCTATGATCATTCTGGTAAGTTTGTACTTTGGGGCTTCTCTT
TATACTAGGTTTTATAAGCAGATAAACACGTGTGTCTCATCCATGCCCTC
CCAACAAGGAGAGATAGCGCCCCCTCTCCAGCATCACAAAAGGCCTGTCA
GAATCTCACCAGGCGCGTGTCTGTCCTAACTCCATGTCTTTCTACCCTAA
CCTCCAATGAGCATGTGACACCCCAGACACAAGTTTTTCTTAGCACTCTT
TGACACGCATTATTATACCTTCTTACCACCAATTTGCAGACCAAATGATA
CTACAGATTGTTAATATGTATCCTTTTTGCTCATTTTTATACGATTATAG
TATTTATTTTCACATAAATCCGCCTTCTAGCCTGATATGTTTTGTATAAC
ATTATCTACACGATTGCTTCTAATACTTGCCACTAACTTTATTTTTTTCC
TTATACAAATGCTCTTTTTATTTTCCCAGCTTTAATATCCTGTTAATTTT
CCCTTGTTAATTTTCTCACTTTCTCACTTATTTTATCTTN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGTAGGTGTGAACATTTGGGGG
GTTTTCCTTTGCCTTTTGATGATCTGATATTTAAGTTTTTTAAATTTCCT
TTTTTGTTTAAGTAGCTTGCAAGCAAGCATTGTCTTACCTTTTATTTCAT
CTGTTCTAGGAAGAAGCTGCAGAGGAAAATAATCAAACATCCAAGATGGA
GTCTGGTCCTTGGAAGTATGTTAAACATGAAAATCTTGTGTTATAGGAAT
TTTACAGTACATGAAAAATATGCTACTTTGTCCTCTAGAGTTGCAATCCC
ATAAAATGTTCTATAATATAAACTTCTTTGTTCATTTTACAGATTTATTC
CATAATCTGTCTTTGTATATTACACCCTATACCTTTTGCCTTTTTTGTTT
TGTTTCATGATACTTAGACTCTGTAGTCTTGTTTTTCCTGTAGCTCACTA
TGTCCAATAGCCTTGCTTCCAATTCACAGAGATCCTTTGCGTCTCCTTTA
ATTGCTTGTCATCCCCACACGTGTGCCATTTATAAATTGGTTTTCCCCAT
CCCTACTTTCTCTATATTTCCTTTTACTGCTCCCCTTATGTATTTTTTCT
TCCATTTACTGTTCTTACCTTTCCTGCCCCTTTCTTCCTCCCTAAAATAA
ATTTGTTCCTCTACCCACCCCCTTCGCTCTTTCTTTTATTTATCTATTCA
CTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_e06.b1 MSMg01no068_e06.b1 CHROMAT_FILE:
MSMg01no068_e06.b1 PHD_FILE: MSMg01no068_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:38 2005
         (281 letters)



>mm_chr6_71682839_71683519
          Length = 681

 Score =  304 bits (157), Expect = 5e-87
 Identities = 175/181 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgaattgttacgttactctttctacgccacactccagtggtattttagaaaaa 64
           ||||||||||||||  | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgaattggaatgtttctctttctacgccacactccagtggtattttagaaaaa 264

                                                                       
Query: 65  tcctcctagtgttctctcttcataaagttaatttgtaaaatcatacacttcaattaagaa 124
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 265 tcctcctagtgttctctcttcataaagtcaatttgtaaaatcatacacttcaattaagaa 324

                                                                       
Query: 125 tgtcatatccacatgctttataagtgtcattcttgtttgcctatgatcattctggtaagt 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 tgtcatatccacatgctttataagtgtcattcttgtttgcctatggtcattctggtaagt 384

            
Query: 185 t 185
           |
Sbjct: 385 t 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no068_e06.g1 MSMg01no068_e06.g1 CHROMAT_FILE:
MSMg01no068_e06.g1 PHD_FILE: MSMg01no068_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:38 2005
         (285 letters)



>mm_chr6_71846811_71847495
          Length = 685

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtaggtgtgaacatttggggggttttcctttgccttttgatgatctgatatttaagt 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 485 actgtaggtgtgaacatttggggggctttcctttgccttttgatgatctgatatttaagt 426

                                                                       
Query: 61  tttttaaatttccttttttgtttaagtagcttgcaagcaagcattgtcttaccttttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tttttaaatttccttttttgtttaagtagcttgcaagcaagcattgtcttaccttttatt 366

                                                                       
Query: 121 tcatctgttctaggaagaagctgcagaggaaaataatcaaacatccaagatggagtctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tcatctgttctaggaagaagctgcagaggaaaataatcaaacatccaagatggagtctgg 306

                                                                       
Query: 181 tccttggaagtatgttaaacatgaaaatcttgtgttataggaattttacagtacatgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tccttggaagtatgttaaacatgaaaatcttgtgttataggaattttacagtacatgaaa 246

                                                        
Query: 241 aatatgctactttgtcctctagagttgcaatcccataaaatgttc 285
           |||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 245 aatatgctacattgtcctctagagttgcgatcccataaaatgttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)