BAC Information

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BAC

Clone NameMSMg01-068E10
Chromosome6 (Build37)
Map Location 91,638,558 - 91,795,371
singlet/doubletdoublet
Overlap geneSlc6a6, Grip2
Upstream geneIqsec1, LOC100043646, EG665685, Nup210, Hdac11, Fbln2, LOC665716, Wnt7a, LOC100043659, LOC625420, Chchd4, Tmem43, Xpc, Lsm3
Downstream geneC130022K22Rik, 4930590J08Rik, Fgd5, Nr2c2, Mrps25, Zfyve20, Trh, LOC665805, Prickle2, LOC545866, A730049H05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068E10.T7 (MSMg01no068_e10.b1)MSMg01-068E10.TJ (MSMg01no068_e10.g1)
ACCAG292808AG292809
length698822
length of high quality
(start - end)		322 (48 - 369)196 (137 - 332)
definitionCHROMAT_FILE: MSMg01no068_e10.b1 PHD_FILE: MSMg01no068_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:39 2005CHROMAT_FILE: MSMg01no068_e10.g1 PHD_FILE: MSMg01no068_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,638,558 - 91,638,879)(91,795,179 - 91,795,371)
sequence
GACTCCTATTTTCAGAGAATCCGCGGAATTCCAAGTGATCTCTTTTGACC
TCCACATGAGATCCTAGCATGTCACATAAGATACACATAGTAATTATATT
TTTTCAAGGAAAAAGATATTTTAAGGGTTTGGGACTGTACAATGTATGCT
TAACCCGAGTTTGATCTCTGGCACACACACTCCTCTCCACCAATTAAATT
AAATTAAATTAAATTAAAGTTGAAGTATAATGCAGAGATGCTTTGAAGTT
CAGTAAATTCAGACATCAGTGTAACTATCAGCCAGATAAAAACATCCCTA
TGTTTTGCACACATGTTTGTGTATAAACATATGTGTGTATGTGCAAACAT
ATGTGTGTGTACTCGTGGAAGTCAGATGCCAACATTAGGTATCTTTTCAC
ATGTTTTCTACCTGTCGTGTGTGTGTGTGTGTGCGTCTGTGTGGTGTGTA
TGCGCGTGAATATGTTCATGTTTGTACAGATGTGTGTGTAGGGTATAGTC
CCACATCAGCCTGCCCTTTCTCCTTTACTCTTTTAACTCCTTTTCTTTTT
TTTTTTTTTAAAATGCCTTTCACCGAACCTGTTACCTTTATATTGCCCCC
CAAAATCACCCTTTATTTCTCATATCTTTTGTTCTCCTACCGTCCTCTTA
TCGTCTTACAATGCCATTATTTTTTTCTTTTTCACACTTTGTTTTTTT

TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCTTTTTTNCCCCTT
TTTTTTTTTTCCCCGATGCTATGTXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAATTCACTTTGCAAACT
TGAGTCTGGCTGATCTGCCCCTCCCTGGCTCTCAGCCTCAGTCCTGCTGA
GTGGAGTGATTAATGGTTCGGAATGAATTGCAGCCTGTGATGGGATCCAT
CAAGGGTTGTTAGGAGCACAAATAAGTGACAAGCGTATATGTCAGGCTTC
GTGGGTAGTGCTGACTGGGGTGCCTTGCATCTGCGCAGACCCATATTTAA
ATGTCAGTTCTGCTAGCCCCTGGCTGAGTGGCTTTGTTTACTGGTCTTCA
CCTTTCTGAGCCCCAGTATCTTCATTTGCTAAATGCCCTCAATTACATCA
ACCTTATCGAATATTTGATGATCTGAATTTACACTCATTCTTTCAAAGGT
GCTCCTTCTGAGGTTCAGAGTTTATTTGTGATGGTCTGATATACCTTGTC
TCCTATTCCGTCTTGAAGATTCTTTCTATAAATTAAATTTCTTGTTTTCA
GTATTGATTTTGTTTTGTCTGCCACTCCATAGGAGTTCCCCTTAACATGT
ATTTTCCCCTACCGTCCAGGTCATTTCTTTATAGATCCTCACCTGCCTTT
TTTCTTTCGGACCTTTTGTTCATTTCTTCTTGACCTCATTTTTTATGCTT
CCCCACGCCTGTCTTTCTTTGGTGCACAACCTTAATACTTGGCTCTTTAT
TTTTTTATTCTTATTTCATGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_e10.b1 MSMg01no068_e10.b1 CHROMAT_FILE:
MSMg01no068_e10.b1 PHD_FILE: MSMg01no068_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:39 2005
         (322 letters)



>mm_chr6_91638358_91639079
          Length = 722

 Score =  607 bits (314), Expect = e-178
 Identities = 320/322 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctccacatgagatcctagcatgtcacataagatacacatagtaattatattttttcaa 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 acctccacatgagatcctagcatgtcacataagatacacataataattatattttttcaa 260

                                                                       
Query: 61  ggaaaaagatattttaagggtttgggactgtacaatgtatgcttaacccgagtttgatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaaaagatattttaagggtttgggactgtacaatgtatgcttaacccgagtttgatct 320

                                                                       
Query: 121 ctggcacacacactcctctccaccaattaaattaaattaaattaaattaaagttgaagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggcacacacactcctctccaccaattaaattaaattaaattaaattaaagttgaagta 380

                                                                       
Query: 181 taatgcagagatgctttgaagttcagtaaattcagacatcagtgtaactatcagccagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatgcagagatgctttgaagttcagtaaattcagacatcagtgtaactatcagccagat 440

                                                                       
Query: 241 aaaaacatccctatgttttgcacacatgtttgtgtataaacatatgtgtgtatgtgcaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaacatccctatgttttgcacacatgtttgtgtataaacatatgtgtgtatgtgcaaa 500

                                 
Query: 301 catatgtgtgtgtactcgtgga 322
            |||||||||||||||||||||
Sbjct: 501 tatatgtgtgtgtactcgtgga 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no068_e10.g1 MSMg01no068_e10.g1 CHROMAT_FILE:
MSMg01no068_e10.g1 PHD_FILE: MSMg01no068_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:39 2005
         (196 letters)



>mm_chr6_91794979_91795574
          Length = 596

 Score =  373 bits (193), Expect = e-108
 Identities = 193/193 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcactttgcaaacttgagtctggctgatctgcccctccctggctctcagcctcagtcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tcactttgcaaacttgagtctggctgatctgcccctccctggctctcagcctcagtcctg 334

                                                                       
Query: 61  ctgagtggagtgattaatggttcggaatgaattgcagcctgtgatgggatccatcaaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ctgagtggagtgattaatggttcggaatgaattgcagcctgtgatgggatccatcaaggg 274

                                                                       
Query: 121 ttgttaggagcacaaataagtgacaagcgtatatgtcaggcttcgtgggtagtgctgact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttgttaggagcacaaataagtgacaagcgtatatgtcaggcttcgtgggtagtgctgact 214

                        
Query: 181 ggggtgccttgca 193
           |||||||||||||
Sbjct: 213 ggggtgccttgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 596
Length adjustment: 8
Effective length of query: 188
Effective length of database: 588
Effective search space:   110544
Effective search space used:   110544
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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