Query= MSMg01no068_j14.b1 MSMg01no068_j14.b1 CHROMAT_FILE:
MSMg01no068_j14.b1 PHD_FILE: MSMg01no068_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:04 2005
(280 letters)
>mm_chr6_24151952_24152631
Length = 680
Score = 526 bits (272), Expect = e-154
Identities = 275/276 (99%)
Strand = Plus / Minus
Query: 5 gaattctgtgaaggtagtgaggtgtggtcaaatgctgggtctaggttaaatatagaactg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gaattctgtgaaggtagtgaggtgtggtcaaatgctgggtctaggttaaatatagaactg 421
Query: 65 gcggggtgaactgaccgagctgttcatgacagatttcgagatgaggagtggttgctgaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gcggggtgaactgaccgagctgttcatgacagatttcgagatgaggagtggttgctgaga 361
Query: 125 tatttgttctaggtacaagagctacatgcgaaacctcccaggttacaggaccctttctct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tatttgttctaggtacaagagctacatgcgaaacctcccaggttacaggaccctttctct 301
Query: 185 ctgagttcccttcaccatattgaagatcaaaacaaacatcatgtttcacctccgagatcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ctgagttcccttcaccatattgaagatcaaaacaaacatcatgtttcacctccgagatcc 241
Query: 245 ttttcagtacctatgcattccattaggctttgagaa 280
||| ||||||||||||||||||||||||||||||||
Sbjct: 240 tttccagtacctatgcattccattaggctttgagaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no068_j14.g1 MSMg01no068_j14.g1 CHROMAT_FILE:
MSMg01no068_j14.g1 PHD_FILE: MSMg01no068_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:04 2005
(293 letters)
>mm_chr6_23976739_23977429
Length = 691
Score = 499 bits (258), Expect = e-146
Identities = 283/292 (96%), Gaps = 2/292 (0%)
Strand = Plus / Plus
Query: 1 caggtactaataactgctgtcaggaaatggaaacagaatttttggagtgttcttgagcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggtactaataactgctgtcaggaaatggaaacagaatttttggagtgttcttgagcta 260
Query: 61 tcttggtagagtcatagatttagcatcttagctgaaatctgaataagagagacaaccata 120
||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctaggt--agtcatagattcagcatcttagctgaaatctgaataagagagacaaccata 318
Query: 121 taatttttatggacacaatatcaatgaagaaagtctaaagtaccagtgaacttggaagtg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 taatttttatggacacaatatcaatgaagaaagtctaaagtaccagtgaacttggaagta 378
Query: 181 ttgaagaagataaaagaatgctttggagagaaaggtaagtgagagaattgggaatctgag 240
||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 379 ttgaaaaacataaaagaatgctttggggagaaaggtaagtgagagaattgggaatctgaa 438
Query: 241 gttaaagagtagagaggaatctaataagtcaaaagcaggtaggacatcatac 292
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gttaaagagtagagaggaatctaataagtcaaaagcaggtaggacatcatac 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 691
Length adjustment: 9
Effective length of query: 284
Effective length of database: 682
Effective search space: 193688
Effective search space used: 193688
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
