BAC Information

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BAC

Clone NameMSMg01-068N19
Chromosome6 (Build37)
Map Location 19,316,723 - 19,317,379
singlet/doubletsinglet
Overlap genenone
Upstream geneCttnbp2, EG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068N19.T7 (MSMg01no068_n19.b1)MSMg01-068N19.TJ (MSMg01no068_n19.g1)
ACCAG293257AG293258
length700704
length of high quality
(start - end)		662 (37 - 698)604 (70 - 673)
definitionCHROMAT_FILE: MSMg01no068_n19.b1 PHD_FILE: MSMg01no068_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:26 2005CHROMAT_FILE: MSMg01no068_n19.g1 PHD_FILE: MSMg01no068_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTGCGGCGCTAAACGACTCCTATAGGGTACGGATCCGCGGAATTCTCT
TAGTTTTATAACTCTTAGCCGTGTACTGGAACTGTCTGTTATTTGGATCA
CTTAGTAATGTTTAGGGGAAAAGAATCTATCCTTTTAGATGGGACTTTAA
ATGGGATTAATTTTAATCTACTTTATATGGAACAAGGCAAGGGATTGAGC
TTTAGCTCATGTGAGGCTTACCTTTGACATGTTAGCTACAATTTTTATAT
TTCTATCTTTTAAACAGATGTTAGTCTCTTTATCTTTAAGTACTTCAAAA
ATTGCCCATAACTTAAGGATAACAGGTTGCTTTTAGTCAACCATAAATTA
TTAGATGATATTAACAAATACCCATTTCTAGCTGCTTATAGATTCAGGCC
TAAGTTCCTTTTTAAGAATTATCTTTAAGCTTTTTTTTTTACAGACCTCT
TGTTTTGCCCTCCAACAGTTCCTCATTCCATTCTTTCTCCCCTGTCTCCA
AGAGGATGTCCCCACATCCCCACATACCCCAAAATCCTGCCAGGCCTCTC
TATTCCCTGGGGCCTCAAGTCTCTCAAGAATTCAGTGCATCTTCTCTCAC
TGAGACTAGACCAGGCAGTCCTCTGCTGTACATATGTTGGGAAGCCTGGA
TTTTTACTTTTTATTTTATTTTTTATTAATCATTCCATTTGTTTACATCT


NTCATGAAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCCTCGCAATTTCATTTTTTGGATGAATATTTGTGTGGTGGA
GGTATCAGGGTGACTGAAGCCCATAAAGTGAATGTGGCAGTGATCCTTCT
GTTTCTATTTTTCAGATTAATTTGAGGAGTATGGGAATTATCTCTTACAT
GAAGATCTGCTAAAATTGTGTGCTAAAATCACCTGGCACTGGCTATTTAT
TTATTTATTTATTTATTTATTTATTTATTTATTTATTTATGTATTCCTCT
GTCGGGAAACTTTTAATGGCTACTTTTATTTCCTTAGGTGTTATAGGTAG
AATTAGACTCTTTACCTGATCTTCATTTAATATTTCAAGTGATATCTATC
AAGAAAATCATCCATTTAATTTAGATTTTTGACGTAAGAGCTAATGACTC
TTTCCATTTCCTCAGTGTGTATTGTTATACACCATTTTCATTAATGATTT
TGCTAATTTGAATATTTATTTCTTTTTCTTTAACTTGGCTAAAGATTTAT
CTATATTGTTAATTTTCTCAAAGACCCAAATTGAGTTTCATTGATTCTTT
CTTTTTATTGTTCTCCTTGTTTCTCATTTATTGATTTCAGCCTGAGTTTG
ACAATTTCCAGCCACCTACTATTTTGGATGTGTTTGCTACTTTTTGTTTT
AAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_n19.b1 MSMg01no068_n19.b1 CHROMAT_FILE:
MSMg01no068_n19.b1 PHD_FILE: MSMg01no068_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:26 2005
         (662 letters)



>mm_chr6_19316519_19317579
          Length = 1061

 Score = 1195 bits (618), Expect = 0.0
 Identities = 648/658 (98%), Gaps = 1/658 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattctcttagttttataactcttagccgtgtactggaactgtctgttatttggatca 64
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcacttagttttataactcttagccgtgtactggaactgtctgttatttggatca 264

                                                                       
Query: 65  cttagtaatgtttaggggaaaagaatctatccttttagatgggactttaaatgggattaa 124
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 265 cttagtaatgtttaggggaaaagaatctatccttttaaatgggactttaaatgggattaa 324

                                                                       
Query: 125 ttttaatctactttatatggaacaaggcaagggattgagctttagctcatgtgaggctta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttaatctactttatatggaacaaggcaagggattgagctttagctcatgtgaggctta 384

                                                                       
Query: 185 cctttgacatgttagctacaatttttatatttctatcttttaaacagatgttagtctctt 244
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 385 cctttgacatgttaggtacaatttttatatttctatcttttaaacagatgttagtctcgt 444

                                                                       
Query: 245 tatctttaagtacttcaaaaattgcccataacttaaggataacaggttgcttttagtcaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatctttaagtacttcaaaaattgcccataacttaaggataacaggttgcttttagtcaa 504

                                                                       
Query: 305 ccataaattattagatgatattaacaaatacccatttctagctgcttatagattcaggcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccataaattattagatgatattaacaaatacccatttctagctgcttatagattcaggcc 564

                                                                       
Query: 365 taagttcctttttaagaattatctttaagcttttttttttacagacctcttgttttgccc 424
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 565 taagttcctttttaagaattatctttaagcttttttttt-acagacctcttgttttgccc 623

                                                                       
Query: 425 tccaacagttcctcattccattctttctcccctgtctccaagaggatgtccccacatccc 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 624 tccaacagttcctcattccattctttctcccctgtctccaagaggatgtccccacacccc 683

                                                                       
Query: 485 cacataccccaaaatcctgccaggcctctctattccctggggcctcaagtctctcaagaa 544
           |||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 684 cacatacccccaaatcctgccaggcttctctattccctggggcctcaaatctctcaagaa 743

                                                                       
Query: 545 ttcagtgcatcttctctcactgagactagaccaggcagtcctctgctgtacatatgttgg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttcagtgcatcttctctcactgagactagaccaggcagtcctctgctgtacatatgttgg 803

                                                                     
Query: 605 gaagcctggatttttactttttattttattttttattaatcattccatttgtttacat 662
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gaagcctggatttttaatttttattttattttttattaatcattccatttgtttacat 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1061
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1051
Effective search space:   685252
Effective search space used:   685252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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