BAC Information

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BAC

Clone NameMSMg01-069G22
Chromosome6 (Build37)
Map Location 62,584,193 - 62,584,306
singlet/doubletsinglet
Overlap genenone
Upstream geneC130092O11Rik
Downstream geneGA_x5J8B7W6GG0-4757855-4757501, LOC667099, Grid2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069G22.T7 (MSMg01no069_g22.b1)MSMg01-069G22.TJ (MSMg01no069_g22.g1)
ACCAG293691AG293692
length710698
length of high quality
(start - end)
164 (124 - 287)286 (56 - 341)
definitionCHROMAT_FILE: MSMg01no069_g22.b1 PHD_FILE: MSMg01no069_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:11 2005CHROMAT_FILE: MSMg01no069_g22.g1 PHD_FILE: MSMg01no069_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAAATTTGCGGCGCTAAACGACTCCTATATGTCGAGATCCGCGGAATTC
TCTACTGATTACACTGAATGGCTGAGAATCAGATTTAAAAAAAAAAAAAG
TTCAACATCCTTATTCAGCCCGGAAATGCAAATTAAAATAACCTTGAGAT
TCCTCCTCATATCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACACC
AGATGCTGACACACATGATATGCACTCACTGATAAGTGGATATTGGACCA
GAAGCTGAGAATACCCAAGATACAATTTGTAAAACACATGTAACTCAAGA
AGAAAGACCAAAGTGTATATATTTTGATCCTTTTTAGAAGGGGAGACATA
ATACCCATGTTTTGTATTTCCTCTACACCAGTTTGGAGCATAGACTGCAT
GAATGACCTTCCAGAGACTGCCCCACATGAAAGATTCATCCCATATACAA
CTACCAAATTTCATCTCTATTTTGAGTGTTACCTATAGCTTGTTTACAGG
AGCCTGATATAGCTTTCTCCTGAGAGGCTTTCCTAGCACTTTACCAACTT
AGAAGTGTACGTTCACAGCTATCCTTTCGCTTTTCCCACCTTTTATGTTC
TAACAGGTACCTTATTTTGACCGGTAATTAATTTAAACATTTATACATCT
ATTTTATACCTATAAGTAATTACCTTTACTCTTTTATTTTCCACATTTTC
CACTTTTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXATTTTATTGGTGACATCAGTGCTTTAATGGGTTCAAATAGAATTA
CTAACCACCCTATAATTAAAAGGTTAGGTAAAATTAGTGCTCATTTAAAA
AACATGGTTTTAAATTTTTACTTCATCATAAAAAACATTGTAATTTAGGA
ATTCAGTTGTAACTCTAAGTAAATCAATGAGTTGAAGTACTGGCTTTAGG
TGGCATCATTGTTTTATTTGTTTGTTATTTTAATATTTTACCTGTTTTTA
TTGTTCGATTACTTCATTTTCTTTGCTGTTAGTGGGACATTTGTAATGTT
TTCACCCCGCCCCCCCCAAAGAAAACTCAATACACTGTCTTATCTCAAAT
CCATTTTTACAAAAAAAAAATTTAGACGGGTGGGTAGATCTATTGCTAAA
CATATAAAATCATCCTAAATTTTCCAAATGTATCATCTTTTACAAATAAT
GAATTTTTTTCTATCCCTGTCCGATAAGATTCAGTTTATTTCATGTCGTT
GAGGCGAACCCCTTTTCTTGTACTGCAATGGTATCGTACTACGTAAAGAA
AATCCTACATCATTTATAGAAATTCTTTACCAAGGCTTCTTCCCCTTTGC
CTAATTTGTTCTGTTTTTACTCTTATTCTCTTTTTAAATATGCCTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_g22.g1 MSMg01no069_g22.g1 CHROMAT_FILE:
MSMg01no069_g22.g1 PHD_FILE: MSMg01no069_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:11 2005
         (286 letters)



>mm_chr6_62583821_62584506
          Length = 686

 Score =  205 bits (106), Expect = 2e-57
 Identities = 112/114 (98%)
 Strand = Plus / Minus

                                                                       
Query: 173 tgagttgaagtactggctttaggtggcatcattgttttatttgtttgttattttaatatt 232
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 486 tgagttgaagtactggctttaggtggtatcattgttttatttgtttgttattttaatatt 427

                                                                 
Query: 233 ttacctgtttttattgttcgattacttcattttctttgctgttagtgggacatt 286
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 426 ttacctgtttttattgttcgattacttcattttctttgctgttagtgagacatt 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)