BAC Information

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BAC

Clone NameMSMg01-069M02
Chromosome6 (Build37)
Map Location 108,848,020 - 108,848,195
singlet/doubletsinglet
Overlap genenone
Upstream geneSetmar, Sumf1, LOC100043718, Itpr1, LOC677205, Bhlhb2, Arl8b, Edem1, EG627371
Downstream geneLOC639110, LOC100043720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069M02.T7 (MSMg01no069_m02.b1)MSMg01-069M02.TJ (MSMg01no069_m02.g1)
ACCAG293938AG293939
length702702
length of high quality
(start - end)
174 (73 - 246)---
definitionCHROMAT_FILE: MSMg01no069_m02.b1 PHD_FILE: MSMg01no069_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:36 2005CHROMAT_FILE: MSMg01no069_m02.g1 PHD_FILE: MSMg01no069_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGG
AATTCTGCCCATTCCCTGACAAACCCAAGACTTGCATCACACACACACAC
ACACACATACACACACACACACCCACACCAGCACATCCAGATATAACACT
GAGCTCAGATGACACTTGAATTTTAGCTTTGGCAAACTAGCCAGAAAACA
GAGCTCATCTGCCCATGCTCCCAACCTGTAAAACAGCAAGACCTTAATAC
ATGGGTGGTGTTGTGAGACACTGTGTTTGTAGTCACTTATTACAAAGGCA
TCAAAAACATACACATAACATGAAGGTCAACACTGCAGGAGTAAAGCAAG
CGAGAATAGCTGTTGATCTACCACCCCACCCAGACTTCCTGATATCCAAC
AGGCTTTGCTTTCACATTAACGCCAGAAGAATTTCCTCTGAATGAGGTTC
ACGGTCTGACCCCATGCACCTTACACTTTCACCCCATATGGCCTTTATTT
GCTATGCCATACACATTCCGCGTTGCCTTTCCCCTTCCTACCTTTCCCCT
TTCCTTATCCCACTTCTCTTTCCCCTTTTCCCTACATACCCTTATCACCA
GTACCCTTATATATTCCCTCTCTTCTCTTTTACATTATCTCTCTCTAATT
CTCCCAAATAATTTTCTCTTTTCCCTTTTATCCCCCCTTTTCACCTTTTC
TA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXAAAGGAATCTGTTGAAGAGGCAAAGGTTCTTTCACTACAG
TCACATTCTCGCAAGGACTGGAGAAAAAGCACTTGTGGTTGGCCAGGGAC
TTGGCTCATCTGCTATACTGCCTGCCCGGCATGCACAATGTACCGTACAA
ACTAAGCATGGTGATGTATACCCATGTGCCCTGAAGCTAGGAGGTTATGG
CCAGAGAACCGGTTGTTTAATGCCTTCCTCAATTACACAGTGAACTCTAG
TCCATCCTGTTCGCGTGATCATAATCACGTAATGAAGGAAGGATTTTATT
TTTTTTCCCCCACCCCCCCCCTCTTTTATATTATAAATATCCTATATCCT
TTTTCTACCAAAAACAAAAAATAATAATTTTTGTAGGTATTTTCTCCAAC
ATTCCCTTTCCTCTTCCTATTCATCTATACTCTTTTCTTCCTTTATTTCC
ATATCCTTATCCCATTTCTTTTATACTTACATATTTATCCAATCCTTACA
CCCTACATCCCTCTTTGTTTCTTCCATCCTTAACCCTACTTATTTCCTTC
TTCTCTCGCTCTTTTTTATCCTTACTATCTCCCTTTCTCTTTCCCCCTTT
CCCTTTTTTTTTTATCTTTTTTCCTTTCTTACTTTTTACATTTATCCTTT
CA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_m02.b1 MSMg01no069_m02.b1 CHROMAT_FILE:
MSMg01no069_m02.b1 PHD_FILE: MSMg01no069_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:36 2005
         (174 letters)



>mm_chr6_108847764_108848337
          Length = 574

 Score =  317 bits (164), Expect = 2e-91
 Identities = 173/176 (98%), Gaps = 2/176 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   acccaagacttgcatcacacacacacacacacacatacacacacacacac-c-cacacca 58
           ||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||
Sbjct: 432 acccaagacttgcatcacacacacacacacacacacacacacacacacacacacacacca 373

                                                                       
Query: 59  gcacatccagatataacactgagctcagatgacacttgaattttagctttggcaaactag 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gcacatccagatataacactgagctcagatgacacttgaattttagctttggcaaactag 313

                                                                   
Query: 119 ccagaaaacagagctcatctgcccatgctcccaacctgtaaaacagcaagacctta 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ccagaaaacagagctcatctgcccatgctcccaacctgtaaaacagcaagacctta 257


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)