BAC Information

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BAC

Clone NameMSMg01-069N11
Chromosome6 (Build37)
Map Location 78,497,564 - 78,497,730
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnna2, LOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
Downstream geneLOC384440, LOC621815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069N11.T7 (MSMg01no069_n11.b1)MSMg01-069N11.TJ (MSMg01no069_n11.g1)
ACCAG294004AG294005
length693692
length of high quality
(start - end)
170 (82 - 251)92 (75 - 166)
definitionCHROMAT_FILE: MSMg01no069_n11.b1 PHD_FILE: MSMg01no069_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:42 2005CHROMAT_FILE: MSMg01no069_n11.g1 PHD_FILE: MSMg01no069_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGGAGCGATCCGC
GGAATTCTCTGGTACCGACACCAGAGAAGNATACTATGGGGCTTTATGTT
TCAAACCAAAGCCTTTGGATGCCCAGTGCCCTGTATTATGAGGTGTAGTT
TCTGCAAAAAGATGACTAATGATGCACACTCATGACTTAACCATTCTTTC
CACAGAGAAAGAGTTAAATAAATTGAATCAAATGTGTGATACCTTCAATG
TGTAAGGTGGTTTAAACTTTGAATGTATAAACCTCAATGCTTTTCTGGCC
ATAGTTGTATTTTATTANCTAATTGGCTTCCGCGGCTGCTCTTCAAGAAT
ATTTTTCTTGTTGTGCGCCCAGCTCTTGTGATAGGAAAGTACAGCTTCGT
ATGGACTGAGTGTTGTGGTACTCTGCTGGCATGCAGTATTATTTAAATTC
TACCTCAACTGCTATGGCTCACCTTCTTCTGACAGCTCATCAGTTTTCCT
TACCTTGACATTTCTCTTATTTTGATCTGTGACATGAAATGCCCGTCTTT
GGCACACCACATGTATTTGACTTTTCCCTTTGACTCTTATCTCTTGTCTT
CATGCTCATGTGTAAATGGATGTCACAAGGTCCTTTCCAGCGCCTTTTTT
TTATTCTTTTTCTCACCCGTTTGTTATTATGCTACCCATTTTT
TTCGATATAGTGTTAGGCCTGGCGGCCGCCTGTTCAACAAAGTTAGGTGA
ACTATAGATTTCCCCGCGAAATTCCACGTAATCTCACTCCCAGTTCCTTT
GGTAACAATACTGTATCTTGTTACTATTTACTTAAAAATTGTCTTCGTTA
ATGGTTATTTCCCCTGGAGAATTTGAGTTCTTTTTTCTTCTCTGTTGATG
TGATGAAAGCTAAGCATGATCAGTCTTACAATAGTATATATAGAATGAGA
TGGTTTTATTTTGTCTTCTTCCCATGAAGACAATGTATTCCATCAGTTAG
GGAAAGCCTATAATTTATATAATCAAGCTTGCCAATCAATACATAGGAAG
CAGATAGATATAATAGAAAACAGCACCAATATATAAACCCTCGAACCAGG
ATTCAGTGATATCTCCAGTAGGGCTCCACCTCTCAAAGCTTCCATAATCT
TTTCAAACCGTATCAATCATCCACAGGGGAACAAGTGTTTTTTATACCGA
GCCCATTAGGGAAATGTTTTATCATTCCACACCTTGACTCTTTTGCTGAA
TCTCAGTTTATACTCCCCGTTATTAGAATTCGATAGATTTATTGACATTT
TTTTTTGAAAGCATTTGTGTGTTTGGCTATGTATGTGCAATCTTTAACAT
GAATGTTTCAATAAATCACGTATTGACATTCCATTACGCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_n11.b1 MSMg01no069_n11.b1 CHROMAT_FILE:
MSMg01no069_n11.b1 PHD_FILE: MSMg01no069_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:42 2005
         (170 letters)



>mm_chr6_78497364_78497933
          Length = 570

 Score =  273 bits (141), Expect = 5e-78
 Identities = 159/167 (95%), Gaps = 4/167 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   atggggc----tttatgtttcaaaccaaagcctttggatgcccagtgccctgtattatga 60
           |||||||    |||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 201 atggggctttatttatgtttcaaaccaaagcctttagatgcccagtgccctgaattatga 260

                                                                       
Query: 61  ggtgtagtttctgcaaaaagatgactaatgatgcacactcatgacttaaccattctttcc 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 ggtgtagtttctgcaaaaagatgactaatggtgcacactcatgacttaaccattctttcc 320

                                                          
Query: 121 acagagaaagagttaaataaattgaatcaaatgtgtgataccttcaa 167
           |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 acagagaaagagttaaataaattgaatcaaatgtgtgataccctcaa 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)