BAC Information

Click to search

BAC

Clone NameMSMg01-069O18
Chromosome6 (Build37)
Map Location 73,158,309 - 73,158,598
singlet/doubletsinglet
Overlap geneDnahc6
Upstream geneAtoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1, Tmsb10
Downstream geneSuclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069O18.T7 (MSMg01no069_o18.b1)MSMg01-069O18.TJ (MSMg01no069_o18.g1)
ACCAG294066AG294067
length702745
length of high quality
(start - end)
291 (73 - 363)---
definitionCHROMAT_FILE: MSMg01no069_o18.b1 PHD_FILE: MSMg01no069_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:48 2005CHROMAT_FILE: MSMg01no069_o18.g1 PHD_FILE: MSMg01no069_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTAAGCCTTCCCCAAGCACGGCTGACAGAGCTTCAATCATTAGTCTC
GAGGCCCAAGAAGCTGTGAAAACCGAAACAGGTACGATATGTAAAACACT
TAAGCAGTCCTTAAATTATCGTGTGTGTGGTGTTGGTCACACGCGTTTAG
TTCCTAAGGAGATGGATACAGTTGCTTGCATTTGCAAAATAGAATATTTC
TAAGGAAAATTAGTACAGGAAAGGAAAGTCGTGGAGGGAACATCCAGCAT
CATTATCATCTTCTGATGTTTTCTTGCTTGCATGCTAATGGTGTTATACA
TAACGTTTTATATGTGTGTCTGCATCCACCTATATATATATATATATATA
CACACATATATATACACATATGTATATATGTGTTTATATCTATATATATA
TGTCATATATAATTGTCTTGCCACTGGTGACTTTTTTCCAGTATTGCTTC
AATTGCATTACTCTGAATAGAGTCCCTATCATATACACTATCCCCCTTAC
ACCGTTCTTTTCTCCCTGTACTTATCACTTTTACCTCCATTAATCTTCTT
GTTTTTGATATTTTCTTGCTTTGCTTAGTATTCCCTATTAACACCCTTTT
CTTCCTTAAGATACTCTGTTTCAAATTTATACCGCATTGTTCCTATCTTC
TC
TGTCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAGGCCCTTAAGAAAGGGGCTCACCCAGAGCTGGGGATGTAGCTCAT
ATCCCCGAGTCCTTGAGTAGCATCCATGAAGCCCTGGACCTCATCCCTCG
CGCCACACAAATGGCTGGTGCCATATGCCTATAATCCCACCATCCAATAA
ATAAAGGCGCGGGATCTGAAACTCTCGGCTATCCCTATCCGCATAGTGAG
TCCACCCTGAACTATGCGTGATCACCTCTAATACATAGGCACGCGTACAC
TTTTATTTTCCCGTAGGTCTGATCAGCGACTAAGAAATATTTTTGAATAG
TTCCCCAAAACAGAGACCTCAGAGGTGTGTATTGGGTTTTTGGTGGCCGG
CTTCTCCTCCCAAAATTCTTATTCCTAAAATTTGGGGCCTCGTCTTGCGG
CCGCTCCCATTCTCCTTACCACATCTACTATCTTCCTATCCTACATTTAC
CAATCTATATATTACGTTTACCATTACTCACCATCACCTTCTAATCACAC
CACTATATATCAATCTCCTTATCAGCACCTACCCTATATTTTTTACATCA
CTACTTTATCGACTTCATCTGTTCGAACGATCGCTAGCTTCTTTTTTTAT
CCTTGCGATTTCCTCCTATCTTCGTTATCCCCTATATCCCATGTTATCAA
TATAATAATTAATAATTCTATCTATATTATTAATATAACCTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_o18.b1 MSMg01no069_o18.b1 CHROMAT_FILE:
MSMg01no069_o18.b1 PHD_FILE: MSMg01no069_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:48 2005
         (291 letters)



>mm_chr6_73158109_73158798
          Length = 690

 Score =  493 bits (255), Expect = e-144
 Identities = 282/291 (96%), Gaps = 1/291 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggctgacagagcttcaatcattagtctcgaggcccaagaagctgtgaaaaccgaaacagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 490 ggctgacagagcttcaatcattagtctcgaggcccaagaagctgtgaaaa-ggaaacagg 432

                                                                       
Query: 61  tacgatatgtaaaacacttaagcagtccttaaattatcgtgtgtgtggtgttggtcacac 120
           ||| ||||||||||||||||||||||||||||| ||| | ||||||||||||||||||| 
Sbjct: 431 tacaatatgtaaaacacttaagcagtccttaaactattgcgtgtgtggtgttggtcacat 372

                                                                       
Query: 121 gcgtttagttcctaaggagatggatacagttgcttgcatttgcaaaatagaatatttcta 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gcttttagttcctaaggagatggatacagttgcttgcatttgcaaaatagaatatttcta 312

                                                                       
Query: 181 aggaaaattagtacaggaaaggaaagtcgtggagggaacatccagcatcattatcatctt 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 311 aggaaaattagtacaggaaaggaaagtcgtggagggaatatccagcatcattatcatctt 252

                                                              
Query: 241 ctgatgttttcttgcttgcatgctaatggtgttatacataacgttttatat 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ctgatgttttcttgcttgcatgctaatggtgttatacataacgttttatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 690
Length adjustment: 9
Effective length of query: 282
Effective length of database: 681
Effective search space:   192042
Effective search space used:   192042
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)