BAC Information

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BAC

Clone NameMSMg01-070H15
Chromosome6 (Build37)
Map Location 42,064,286 - 42,064,411
singlet/doubletsinglet
Overlap genenone
Upstream geneTcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva
Downstream geneTas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070H15.T7 (MSMg01no070_h15.b1)MSMg01-070H15.TJ (MSMg01no070_h15.g1)
ACCAG294489AG294490
length685699
length of high quality
(start - end)
574 (36 - 609)536 (76 - 611)
definitionCHROMAT_FILE: MSMg01no070_h15.b1 PHD_FILE: MSMg01no070_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:34 2005CHROMAT_FILE: MSMg01no070_h15.g1 PHD_FILE: MSMg01no070_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTACT
CTCCCAGCTAGCCTTTTAGGATCCTTGTCCCAGAGACCCGCATACCCGAC
TGAGGTGGTCCATGGCAGTCGGCACCCAAATGCGGGGCTCAAATCAGGTA
AGCTTTCTCTCTCCTTTTTTTTTTTCTTTCCATTTTTTATTAGGTATTTA
GCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCAC
TCCCACTCCCCTACCCGCCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCT
GTTCTGGGGCATATAAAGTTTGTGTGTCCAATGAGCCTCTCTTTCCAGTG
ATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCT
CCGGGGCACTGGTTAGTTCATAATGTTGATCCACCTATAGGGTTGCAGAT
CCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGT
GATCCATCCATTAGCTGACTGTGGGCATCCACTTCTGTGTTTGCTAGGCC
CCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATAAAAT
CTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATAGGGTG
GATCCCTGGATAAGGCAGTCTCTACATGGTCCATT
NCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCTG
AGAAGCATCTGAAAAAATGCTAAGCATCCTTAATCATCAGAGAAATGCAA
ATCAAAACAACCCTGAGATTCCATCTCATCCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAAGATGTAGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGTATTGCAAGCTTGTACAATCACTCTGGAAAT
CAGTCTGGCGGTTCTTCAGAATATTGGACATATTTCTATGGGAGGATCCC
ACAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCAGTAAGAA
GGACACATGCTCCACTATGCTCATTTCACTAGGAAAGGGGATAAAATTTG
AAATGTAAACAAGAAAATATCTAATAAAAACTATAAAAAGAAAGAGAGAG
AGAGAGTGAGAAAATGGAAGGAAGGACAGAAGGAAGGAAGGAAGGAAGGA
AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG
GAAGGAAGGAAGGCAAAGTTACACCGATCCAATTCTATTCTCTTCTCTAC
TTCTTATTCTTCTTTCCTTCGATTCCTTCATACATATACTCTATATCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_h15.b1 MSMg01no070_h15.b1 CHROMAT_FILE:
MSMg01no070_h15.b1 PHD_FILE: MSMg01no070_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:34 2005
         (574 letters)



>mm_chr6_42064062_42065035
          Length = 974

 Score =  207 bits (107), Expect = 2e-57
 Identities = 123/131 (93%), Gaps = 5/131 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttactctcccagctagccttttaggatccttgtcccagagacccgcatacccga 64
           |||||||||||| ||     |||||||||||||||||||| |||||||||||||||||||
Sbjct: 350 gaattcttactcacc-----agccttttaggatccttgtcacagagacccgcatacccga 296

                                                                       
Query: 65  ctgaggtggtccatggcagtcggcacccaaatgcggggctcaaatcaggtaagctttctc 124
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 295 ctgaggtggtccatggcagtcggcacccaaacgcggggctcaaatcaggtaagctttctc 236

                      
Query: 125 tctcctttttt 135
           |||||||||||
Sbjct: 235 tctcctttttt 225


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)