Query= MSMg01no070_m01.b1 MSMg01no070_m01.b1 CHROMAT_FILE:
MSMg01no070_m01.b1 PHD_FILE: MSMg01no070_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:55 2005
(459 letters)
>mm_chr6_64941305_64942163
Length = 859
Score = 843 bits (436), Expect = 0.0
Identities = 451/456 (98%), Gaps = 2/456 (0%)
Strand = Plus / Plus
Query: 5 ggaattctggggctaccaccttaggaatgaaattgtgcccagccagaaagaatgctggct 64
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattctagggctaccaccttaggaatgaaattgtgcccagccagaaagaatgctggct 264
Query: 65 cataagagattctttcccagtgccactgtcagtatcccaggtagtgaacttcttcttttt 124
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cataatagattctttcccagtgccactgtcagtatcccaggtagtgaacttcttcttttt 324
Query: 125 ttttttt-ctttaaagattttttttaattttatgtatatgagtacacacggtagctgtac 183
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttttttctttaaagattttttt-aattttatgtatatgagtacacacggtagctgtac 383
Query: 184 agatggttgtgagccttcatgtggttgttgggaattgaatttttaggacctctgctcgct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agatggttgtgagccttcatgtggttgttgggaattgaatttttaggacctctgctcgct 443
Query: 244 cctgtcaaacgtgctcactctggcccaaagatttattattataattctttaaatgtgcca 303
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 444 cctgtcaaacgtgctcactctggcccaaagatttattactataattctttaaatgtgcca 503
Query: 304 ggagagggtatcagatctcattacagatggttgtgagccactatctggttgctgggattt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggagagggtatcagatctcattacagatggttgtgagccactatctggttgctgggattt 563
Query: 364 gaactcagaaccttcaggagggcagtcagtgctctcacccgctaggccatctcgccagcc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaactcagaaccttcaggagggcagtcagtgctctcacccgctaggccatctcgccagcc 623
Query: 424 tggaagtgaaattcttaaagtggtaggttattatta 459
||||||||||||||||||||||||||||||||||||
Sbjct: 624 tggaagtgaaattcttaaagtggtaggttattatta 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no070_m01.g1 MSMg01no070_m01.g1 CHROMAT_FILE:
MSMg01no070_m01.g1 PHD_FILE: MSMg01no070_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:56 2005
(400 letters)
>mm_chr6_65087865_65088664
Length = 800
Score = 752 bits (389), Expect = 0.0
Identities = 398/401 (99%), Gaps = 2/401 (0%)
Strand = Plus / Minus
Query: 1 ttgatagaaagaacagtttcagggggaggggcagaagggatgaaagagaataactgccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ttgatagaaagaacagtttcagggggaggggcagaagggatgaaagagaataactgccaa 541
Query: 61 gaatgactaaaactcattgtatttgcatacatttgtgaaaccatcaaaggatttttttaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 540 gaatgactaaaactcattgtatttgcatacatttgtgaaaccatcaaaggattttttt-a 482
Query: 121 aaaatgaaaacaataaagg-caccttcctttttttctctttccagaattgtaccatgcct 179
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaaatgaaaacaataaaggccaccttcctttttttctctttccagaattgtaccatgcct 422
Query: 180 aactacaaactgctttattttaatatgaggggaagagccgaaattattcgctacatattc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aactacaaactgctttattttaatatgaggggaagagccgaaattattcgctacatattc 362
Query: 240 gcttatttggacgtaaagtatgaggatcacagaatagaacaagctgactggcctaaaatc 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcttatttggacataaagtatgaggatcacagaatagaacaagctgactggcctaaaatc 302
Query: 300 aagccaagtaagtgtcacaaactgttcagccttatgcagggagagtggacttcagggctt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aagccaagtaagtgtcacaaactgttcagccttatgcagggagagtggacttcagggctt 242
Query: 360 tccagtgaaatggaagcccagccccacagagcttaacactg 400
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tccagtgaaatggaagcccagccccacagagcttaacactg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space: 309281
Effective search space used: 309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
