BAC Information

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BAC

Clone NameMSMg01-070P15
Chromosome6 (Build37)
Map Location 113,720,627 - 113,904,690
singlet/doubletdoublet
Overlap geneAtp2b2
Upstream geneSrgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13
Downstream geneSlc6a11, LOC666491, Slc6a1, Hrh1, Atg7, Vgll4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070P15.T7 (MSMg01no070_p15.b1)MSMg01-070P15.TJ (MSMg01no070_p15.g1)
ACCAG294870AG294871
length699691
length of high quality
(start - end)		656 (44 - 699)620 (72 - 691)
definitionCHROMAT_FILE: MSMg01no070_p15.b1 PHD_FILE: MSMg01no070_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:13 2005CHROMAT_FILE: MSMg01no070_p15.g1 PHD_FILE: MSMg01no070_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,720,627 - 113,721,269)(113,904,069 - 113,904,690)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCGAGATTACCTTAAGGCGATGGCTTGAGTGGTAGATGCTTTTATCC
ACTGAGCCAAGCCGCCTTGCTAACACTGTAGCATGCATTTCTGCACCCAC
ATCCCAGCAGGCCATGGGTGAGATGGGGTACTGGGCTGGATGACGGAGGG
CTGTGGGCAGGAGGATGGACTGAAGGAAGGTCTGGCGGGTGTAGGTGTGA
GGCTTCTAGCAGCTGCTTCTGGTCTGAAGACGTCAGAGCCTGGAAGGAAA
GGGCCTCTGAGTGGACACCCCTTCTGTAGATAGAAGATAAAGGTCCCAGC
AAGCAGGTGGCTTGGTGGGGGGCAAAGCTTGGGCTTGTGTCCAGCCAGCC
CTTGCCAGACCTGTGCTTGAAGCAAGAACTCTAGATGATAATGCTGTCGT
CCAAAAGTCCCAGGGTCTTGCTCCAAGTCCTGGGCACGGATCTCTCTAAG
GATCTCTTTAGAGGCTTCTCCTTCCAGCTTCTTTCTATGGCATCTGGATC
AAGGCCTAGGATACCAGGTCTACTCTGTATCTGTCTATCTACTTAACAGT
GAGACTTTAGGACTCTGTTGGCCTCTCAGGGCCCAATGTGCTCATCTTTA
AACTGATGAATGAGGCCAAAGTTCANATCTCCACTCACTGGAGTAATTG

NCGATGAAGTGGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGGCATCCTAGCCTAATGGTGATTTTGA
GGCCAACCTGGGCTACATCCCATCTCAAAATAAACAAATTTAAAAAAAAA
CATAAAAAGTAGGAAGGGAAGCTGGGGATAGCTCACTTGCATGCACACCA
AACACACATCCACATGCAAAGTGGAGAAGGTATTTGGGGGCTCACAGACT
CAAGGGCTGTCAATCCTACAAGGAAGAGACGGCAACTGGAGGCGGTAACT
CTAGTGGCAGAACGGAGAGGCATAGATGGTTCACATGGCTGCAGGAAGGA
AGCCGAGGAAACAAGCCTGGGACCAGGAGCAAGAGTAACTTCAAAGGCAT
TCCCCCAGGGAGCCTGTCCCCATCTCCTAAAGGTTCCTCAGTCTGCCAAA
GAGTGCCACCCTCAGCCCAGCAGCGAGGAAGGTGGAATTCAGGGATCTAG
GCTGACCATTTCCATTGTCTGATACTGGAGGGTAGTACAAGGCCTCAGGC
CCCCCACTAGAGGCCTAGACATGATCTGCAGACCTGGACTTAAGACCTAG
ACATGGCCAGCAAGCTTAAGTTGGAGGTGCGGATGCAGTCTAGAGACCTA
GGTCTGAGGCTTGGTTCTGGGAAGAGAAGTAAGGCTGGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_p15.b1 MSMg01no070_p15.b1 CHROMAT_FILE:
MSMg01no070_p15.b1 PHD_FILE: MSMg01no070_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:13 2005
         (656 letters)



>mm_chr6_113720413_113721469
          Length = 1057

 Score = 1183 bits (612), Expect = 0.0
 Identities = 635/643 (98%), Gaps = 1/643 (0%)
 Strand = Plus / Plus

                                                                       
Query: 15  gattac-cttaaggcgatggcttgagtggtagatgcttttatccactgagccaagccgcc 73
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 215 gattacacttaaggcgatggcttgagtggtagatgcttttatccactgagccaagccacc 274

                                                                       
Query: 74  ttgctaacactgtagcatgcatttctgcacccacatcccagcaggccatgggtgagatgg 133
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttgctaatactgtagcatgcatttctgcacccacatcccagcaggccatgggtgagatgg 334

                                                                       
Query: 134 ggtactgggctggatgacggagggctgtgggcaggaggatggactgaaggaaggtctggc 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ggtactgggctggatgacggagggctgtgggcaggaggatggactgaaggaaggtctggc 394

                                                                       
Query: 194 gggtgtaggtgtgaggcttctagcagctgcttctggtctgaagacgtcagagcctggaag 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gggtgtaggtgtgaggcttctagcagctgcttctggtctgaagacgtcagagcctggaag 454

                                                                       
Query: 254 gaaagggcctctgagtggacaccccttctgtagatagaagataaaggtcccagcaagcag 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gaaagggcctctgagtggacaccccttctgtagatagaagataaaggtcccagcaagcag 514

                                                                       
Query: 314 gtggcttggtggggggcaaagcttgggcttgtgtccagccagcccttgccagacctgtgc 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 515 gtggcttggtggggggcaaagcttgggcttgtgtccagccagcccttgccagacctgtgt 574

                                                                       
Query: 374 ttgaagcaagaactctagatgataatgctgtcgtccaaaagtcccagggtcttgctccaa 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ttgaagcaagaactctagatgataatgctgtcgtccaaaagtcccagggtcttgctccaa 634

                                                                       
Query: 434 gtcctgggcacggatctctctaaggatctctttagaggcttctccttccagcttctttct 493
           ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 635 gtcctgggcacggatttctctaaggatctctctagaggcttctccttccagcttctttct 694

                                                                       
Query: 494 atggcatctggatcaaggcctaggataccaggtctactctgtatctgtctatctacttaa 553
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 atggcatctggatcaaagcctaggataccaggtctactctgtatctgtctatctacttaa 754

                                                                       
Query: 554 cagtgagactttaggactctgttggcctctcagggcccaatgtgctcatctttaaactga 613
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cagtgagactttaggactctgttggcctctcagggcccaatgtgctcatctttaaactga 814

                                                      
Query: 614 tgaatgaggccaaagttcanatctccactcactggagtaattg 656
           ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 815 tgaatgaggccaaagttcaaatctccactcactggagtaattg 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1057
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1047
Effective search space:   676362
Effective search space used:   676362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no070_p15.g1 MSMg01no070_p15.g1 CHROMAT_FILE:
MSMg01no070_p15.g1 PHD_FILE: MSMg01no070_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:14 2005
         (620 letters)



>mm_chr6_113903802_113904821
          Length = 1020

 Score = 1172 bits (606), Expect = 0.0
 Identities = 618/622 (99%), Gaps = 3/622 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagg-catcctagccta-atggtgattttgaggccaacctgggctacatcccatctc-aa 57
           |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 889 aaggtcatcctagcctacatggtgattttgaggccaacctgggctacatcccatctcaaa 830

                                                                       
Query: 58  aataaacaaatttaaaaaaaaacataaaaagtaggaagggaagctggggatagctcactt 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 aataaacaaatttaaaaaaaaacataaaaagtaggaagggaagctggggatagctcactt 770

                                                                       
Query: 118 gcatgcacaccaaacacacatccacatgcaaagtggagaaggtatttgggggctcacaga 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 gcatgcacaccaaacacacatccacatgcaaagtggagaaggtatttgggggctcacaga 710

                                                                       
Query: 178 ctcaagggctgtcaatcctacaaggaagagacggcaactggaggcggtaactctagtggc 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 709 ctcaagggctgtcaatcctacaaggaagagacggcaactggaggcggtaactccagtggc 650

                                                                       
Query: 238 agaacggagaggcatagatggttcacatggctgcaggaaggaagccgaggaaacaagcct 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 agaacggagaggcatagatggttcacatggctgcaggaaggaagccgaggaaacaagcct 590

                                                                       
Query: 298 gggaccaggagcaagagtaacttcaaaggcattcccccagggagcctgtccccatctcct 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gggaccaggagcaagagtaacttcaaaggcattcccccagggagcctgtccccatctcct 530

                                                                       
Query: 358 aaaggttcctcagtctgccaaagagtgccaccctcagcccagcagcgaggaaggtggaat 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aaaggttcctcagtctgccaaagagtgccaccctcagcccagcagcgaggaaggtggaat 470

                                                                       
Query: 418 tcagggatctaggctgaccatttccattgtctgatactggagggtagtacaaggcctcag 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tcagggatctaggctgaccatttccattgtctgatactggagggtagtacaaggcctcag 410

                                                                       
Query: 478 gccccccactagaggcctagacatgatctgcagacctggacttaagacctagacatggcc 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gccccccactagaggcctagacatgatctgcagacctggacttaagacctagacatggcc 350

                                                                       
Query: 538 agcaagcttaagttggaggtgcggatgcagtctagagacctaggtctgaggcttggttct 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 agcaagcttaagttggaggtgcggatgcagtctagagacctaggtctgaggcttggttct 290

                                 
Query: 598 gggaagagaagtaaggctgggc 619
           ||||||||||||||||||||||
Sbjct: 289 gggaagagaagtaaggctgggc 268


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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