Query= MSMg01no071_d07.b1 MSMg01no071_d07.b1 CHROMAT_FILE:
MSMg01no071_d07.b1 PHD_FILE: MSMg01no071_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:31 2005
(562 letters)
>mm_chr6_78478315_78479276
Length = 962
Score = 669 bits (346), Expect = 0.0
Identities = 361/366 (98%), Gaps = 1/366 (0%)
Strand = Plus / Minus
Query: 198 tttcatgaggtcccatttgtcgattctcgatcttacagcataagccattgctgttctatt 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 tttcatgaggtcccatttgtcgattctcgatcttacagcataagccattgctgttctatt 903
Query: 258 caggaa-ttttcccctgtgacaatatcttcgaggcttttccccactttctcctctataag 316
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 caggaatttttcccctgtgacaatatcttcgaggcttttccccactttctcctctataag 843
Query: 317 tttcagtgtctctggttctatgtggagctccttgatccacttagatttgaccttactaca 376
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 842 tttcagtgtctctggttttatgtggagctccttgatccacttagatttgaccttagtaca 783
Query: 377 aggagataggaatggatcaaagtgtacagattgtgtcctctcataaaaattgacagtcaa 436
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 782 aggagataggaatggatcaaagtggacagattgtgtcctctcataaaaattgacagtcaa 723
Query: 437 cagttaactaggacaaaggctctcatcagcatcaaatctttagtaccttcatcatgagtt 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 cagttaactaggacaaaggctctcatcagcatcaaatctttagtaccttcatcatgagtt 663
Query: 497 tctcggccatttgagttatgtgaatttccagtttctttctaagatcacaatcatctatta 556
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 662 tctcggccatttgagttatgtgaatttccagtttctttctaagatcaaaatcatctatta 603
Query: 557 catatt 562
||||||
Sbjct: 602 catatt 597
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no071_d07.g1 MSMg01no071_d07.g1 CHROMAT_FILE:
MSMg01no071_d07.g1 PHD_FILE: MSMg01no071_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:32 2005
(244 letters)
>mm_chr6_78378802_78379447
Length = 646
Score = 460 bits (238), Expect = e-134
Identities = 242/244 (99%), Gaps = 2/244 (0%)
Strand = Plus / Plus
Query: 1 ttgggtctagaagagttaaggaatcagtcatagaaaagtttgagtcctggaagcctataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgggtctagaagagttaaggaatcagtcatagaaaagtttgagtcctggaagcctataa 260
Query: 61 ttaatgctaaataacaatctttacattactgaatcaatgaatttataaagaatgacccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaatgctaaataacaatctttacattactgaatcaatgaatttataaagaatgacccaa 320
Query: 121 ataaaatatactgtcatacttaattgactctataaatatataaaattctgaagtattaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataaaatatactgtcatacttaattgactctataaatatataaaattctgaagtattaag 380
Query: 181 ggttaggattaaaaaaaaaaa--caatactttttcagagaatcagctgaatcccaaacat 238
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttaggattaaaaaaaaaaaaacaatactttttcagagaatcagctgaatcccaaacat 440
Query: 239 tgat 242
||||
Sbjct: 441 tgat 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 646
Length adjustment: 9
Effective length of query: 235
Effective length of database: 637
Effective search space: 149695
Effective search space used: 149695
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
