BAC Information

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BAC

Clone NameMSMg01-071G03
Chromosome6 (Build37)
Map Location 129,667,946 - 129,668,070
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1
Downstream geneKlri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071G03.T7 (MSMg01no071_g03.b1)MSMg01-071G03.TJ (MSMg01no071_g03.g1)
ACCAG295179AG295180
length799748
length of high quality
(start - end)
128 (49 - 176)---
definitionCHROMAT_FILE: MSMg01no071_g03.b1 PHD_FILE: MSMg01no071_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:46 2005CHROMAT_FILE: MSMg01no071_g03.g1 PHD_FILE: MSMg01no071_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATATTTGCGGCGCTATACGACTCCTATAGGTTCAGATCCGCGGATTCA
TGAAAATTATACCAATAGTGGACACCCCTTAGAACAATAAATATTTTAAT
CAAATGATAGTTTCTTTCTTAGATAGAATCTCTCTACTTAGCTCTGACTA
TCCTGGTTCTTATTATGTGAACCAGCATATGGGGTCTCTGTATTTAGCCT
TGGCTATCTATCCTGTACACACTATCTATATTTGTGTTATATGTTCTCTT
TATTTACTCATGACTTTCATATTTTATTTCTTTTGTCCCACTTCTGTCGA
CTGTTGTCTTTCAGCTCTTGCTTTTGTTTGTTTTTCCTGTTTTTTTTTTT
GATTTCTTCTTATGCTTTTATTTTTACCTATTACATTATCTTATTCTTTT
ATTTTTTATTTCTTTTCACGTGCCTTCATCTTTTTCCTTCCCCTCACCTC
TTGTTCTCTTTTTTCTTTTTTCTTTTCTATTCCTTTTTTTCTGTTCTTCG
CTTTCCTTTTGCTTCTCATATTTTCCTGTTTTATTTTCTGGATATTTATA
TATTTACATCTCACATACACACTCTCTTACACCTGAATCTATCTTTCTTC
ACCTTCCACTTTCTTTATCACTTTATCTTTCTTTTTTATATCTCTTCTTT
TTCAATATTATATTATTCATATTTCCCTCTTCTTTTTCTATATTTTTTTA
TTTGTCTCTCCTCTCTTTTTTTATTTTTCTTTATATTCACTATTATCTTT
TTCTTTCTCCCTCTTATCTCTTTTTCTTCTTCTTATATATTTCTATTCA
TATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTGATCTACTTTTACTTGACCTTTGTTCAA
GAAGATATGAATATGTCGACTTGCATTTTCCTACTTGCTAACAACCAGTT
GTACCAGCACTATTTGTTAAAATGCTTCCTTTTTCTCTCCGGATGGTTTT
ATCTCCTTTGTACTATATATTGCGACCAGAGGGACATGGGTCCATTTCTG
CGCCTTCTATACAATTCCTAAGATCTTCCTAGCCGACATTGTAATATACC
CCCCAGTTCATGTAACTATACCACACCCATAAAACACGAAGACACGAACA
GAACGCGCCCCCAGAAACGCTACTTAATGTTTGAAATTATCATTTGCCAT
TATCCCTTATTATATTAATTCTTTATTAATATTATATTTTTTTTTTTCAA
TTCTTTTATTATTTTAATTTTTAATTTATATTTTCTTTAATATTTATCTT
TTATATATATTTATACAATAAAATATCATATAAAAATATATAAATACTAA
TAAAACTAACTACTACCATTATAATTATATCCATATCACTAATATCCTAT
TATAACCTCCTTTTCTCATAATATCTCTTATTACTATTTTCATTCCACAA
ATAACAATTATTATAATTTACATAAATTTCCACCCTACCCCCATTTCATC
TATTAATTCTTCCCTCTATATATATAATTTCTATCCTATATCCCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_g03.b1 MSMg01no071_g03.b1 CHROMAT_FILE:
MSMg01no071_g03.b1 PHD_FILE: MSMg01no071_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:46 2005
         (128 letters)



>mm_chr6_129667746_129668273
          Length = 528

 Score =  194 bits (100), Expect = 2e-54
 Identities = 120/128 (93%), Gaps = 3/128 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgaaaattataccaatagtggacaccccttagaacaataaatattttaatcaaatgat 60
           ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgaaaattaaaggaatagtggacaccccttagaacaataaatattttaatcaaatgat 260

                                                                       
Query: 61  agtttctttcttagatagaatctctctacttagctctgactatcctggttcttattatgt 120
           |||||||||||||||||||||||||||||||||| |||||||||||||| |||||   ||
Sbjct: 261 agtttctttcttagatagaatctctctacttagccctgactatcctggtacttat---gt 317

                   
Query: 121 gaaccagc 128
           ||||||||
Sbjct: 318 gaaccagc 325


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 128
Length of database: 528
Length adjustment: 8
Effective length of query: 120
Effective length of database: 520
Effective search space:    62400
Effective search space used:    62400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)