BAC Information

Click to search

BAC

Clone NameMSMg01-071K17
Chromosome6 (Build37)
Map Location 9,701,529 - 9,701,719
singlet/doubletsinglet
Overlap genenone
Upstream geneIca1, LOC100040238, Nxph1
Downstream geneLOC330264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071K17.T7 (MSMg01no071_k17.b1)MSMg01-071K17.TJ (MSMg01no071_k17.g1)
ACCAG295397AG295398
length707713
length of high quality
(start - end)
111 (124 - 234)191 (123 - 313)
definitionCHROMAT_FILE: MSMg01no071_k17.b1 PHD_FILE: MSMg01no071_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:09 2005CHROMAT_FILE: MSMg01no071_k17.g1 PHD_FILE: MSMg01no071_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAACAAAATTTGCGGCGCTAAACGATNACTATAGGTACTGTATCGGCGGA
ATTCATTGGTATTGAACAAAAAAAATGAAAAGAAATCAATAACTCAGGCA
TTAAAATCAACTACTTTATTGCACCTTATGAAACTGAAGACTTTCTTTAA
GGCAAAGGACACTGTTAATAAGACAATACGGCAGCCCTCAAAATGGAAAA
AGAGAATTCTCAACATAGAATTCTTGAATGGCCTAGAAGCACTTAAAGAA
TTGTTCAATGCTTTAGTCATAGAGTAAATGCAAATCAAAAGGATTCTGAG
ATTCAACCATACAGTTAATAGATTGGCTAAGATCAAAACCTCAAGCAACA
GCACAATTTATGGAGGATGCTGAACATAGGGAACACTCCTCCATTACTTG
AGGGAGTGTATACCTGTTCAAGCCCTCTGGAAATCAATTAGTTGGATTCC
CATGAAAATTAAGAGTTGTTCCACCTCAACAACCAGTTTTACCCTTGCTG
ATCCTATACCATATTGATGCTCTACCATATCACAAATCCATTTGTTCTAT
TAAGACCCTAGCATCTTCATTCTTAAAAGCCCTATTATGGTAAATACCCT
TAAGACTCTCCACAGAAAAAATGTAATAAAAAAATGCTGATTATTTTGTT
TTATAAAATCTCCACATCACCTTAGGATTTATTAATTATATCTAGTAATT
TGGATGG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAAAAAATCTGTTTCTTTTGTTCTACAGTTCACAACT
GGGTAATTTCTATGCTGACTACACACACACACACACACACACACACACAC
ACACACACACACAGAGTAACAGGCACATGTTCACTGGGCTGCCTAACTTC
ACAGAAAACCATTTACCTATATCTGCTTTAGTGGCCTTCTAAACAGTCAT
CTTCTTCGCGGAATTCTTCTGCTTAGATGCTGCAGTCATATTATCTCTGG
TTCTAGATTTTGCTCTATTTTCATTTCTCCTCTTTATTTTAATAGACTTT
GTCTTATGCTTGATAAATATTTTTGTATTTGGATTCCTCTATTCTCATAT
GAATACTATTGAAATCTCCTTACACAACACATCTCTACCTGACAAGAAAG
CTCTCTCATTGAATATAAACCCCTCAAACCCTAACTCTTCCAATTTCCCA
GAAAACTTCTAACGATCTAACTAACCTTAAACAAATTCTGACAGACTTTT
AGATCCTTGGTCTTAATGACCATAAACTTTTTTGAGAAGCAGTCTTTATA
ATAATTAATATATTGTACTCAATAAATTTAGATCCAACATTTAAATTAAT
CACAACCCCCTTACTATCCTGTAAACCCCGCACCAAAACAAAACGAAACT
AACGGAAAGCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_k17.g1 MSMg01no071_k17.g1 CHROMAT_FILE:
MSMg01no071_k17.g1 PHD_FILE: MSMg01no071_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:09 2005
         (191 letters)



>mm_chr6_9701287_9701877
          Length = 591

 Score =  346 bits (179), Expect = e-100
 Identities = 188/191 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacacacacacacacacacacacacacacacacacacacagagtaacaggcacatgttc 60
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 433 acacacacacacacacacacacacacacacacacacacacacagtaacaggcacgtgttc 374

                                                                       
Query: 61  actgggctgcctaacttcacagaaaaccatttacctatatctgctttagtggccttctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 actgggctgcctaacttcacagaaaaccatttacctatatctgctttagtggccttctaa 314

                                                                       
Query: 121 acagtcatcttcttcgcggaattcttctgcttagatgctgcagtcatattatctctggtt 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 acagtcatcttcttcgcgggattcttctgcttagatgctgcagtcatattatctctggtt 254

                      
Query: 181 ctagattttgc 191
           |||||||||||
Sbjct: 253 ctagattttgc 243


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 16
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)