BAC Information

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BAC

Clone NameMSMg01-071L10
Chromosome6 (Build37)
Map Location 54,652,443 - 54,652,772
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik
Downstream geneZnrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071L10.T7 (MSMg01no071_l10.b1)MSMg01-071L10.TJ (MSMg01no071_l10.g1)
ACCAG295431AG295432
length697697
length of high quality
(start - end)
332 (45 - 376)330 (72 - 401)
definitionCHROMAT_FILE: MSMg01no071_l10.b1 PHD_FILE: MSMg01no071_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:12 2005CHROMAT_FILE: MSMg01no071_l10.g1 PHD_FILE: MSMg01no071_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACCATGTGCGCAGGACACTTGCTGTGCCTCTGGCTTGGTAGGGGG
CATCATGAAAGTCACAGAGCCATTACCAGCATCCTCTAAGCAACCAATTC
TCTAGAGACAGCCAAGGACACAAGTCGTCCTGTGTCCCAGAAGGTAAGTG
TGGGTGGGCTATGTGCTTTGTTTACAACTCGGATGGATGGAGACCTAACT
CTTCACTGCACCTGTCCACCTGCTCCCAACACACATTAAGTCTTGCCCAT
CCCTACGTTCCTCTCACTGGAAAAAAAACCAGATTTGATTCAACTGTTTC
CCAACTGGTGAGTTTTAACATGCAACAACTAAAAGTTCCAGTCTGGGATC
ACGACTCCCTGACCATACGTTTTGTGCTCAGATAATAAACCGAAACAATA
TTCAGAGACTTGCATTGTGCTAGATAACAGTTCTGCCTGCACTGACCAGG
TTTGGCACCCCCAGATCCAGTCTGACTTAAGCGCACTGATTAACTAGTTC
CGGCTCTAGCTCGCTTGATTATCTCTTCACGTAGCACACATTTTGTGCTC
TGGCCATGGACCACCACAATGTATTCTGTGTTTGCCACAGCCCAGTAAGC
CCCATTGGACCCTTCGGTCTGACTGAACCCTATTGATGCTTGTCCCA
AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGGAAAGAAGCTATATCTACAGAGATTG
ACTGACTATGAGAACCACAGCTCTGTGGAGAAGTTGGAATGTTGCAGATC
CAGAGGCTAATTAATTACCTTTCTCGGATCTCATCTTCCAGAAGAGCCAT
CCCTTGCCCACCTCTGTGACAGAACATCTTGTGAATAACAGATAGAAACC
TTTTAGAATCTATGAGCTCGGCAGACCTCTAGCTTCCACCAATCCAAACG
TTAAGAATGTCTTCTTATCGCATCCTGAGACTATAGAAAAGCCTCTTCCA
TCTTGCATGAATCACCTCTCTGATGGACCTATTATGCATTTTAAACTTGT
CTTGATTCACCACTTTCTTTTTTCCTTAAAACTATACAACTTCATGGATT
TGCTTCCACGCTGGAACATGCAATTTGTAGCAACCTACTTATGTGCCCCC
CGGCTATGGCCATCCAAATTTTTGTTTCCAGAATAAACCATCTCTTATTC
CCTTTATGAGGAGATCTGTAGCTTTGCATCCAATAGAAACCATATCCTCC
CTCTAAACAATGTCCTTTATTTTGCTCGAATTCACCATCCCTTTTTTGTT
ATTTTCTTGCTCTCTAATATATTTTCCCTGGCTTGGAATGAGAACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_l10.b1 MSMg01no071_l10.b1 CHROMAT_FILE:
MSMg01no071_l10.b1 PHD_FILE: MSMg01no071_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:12 2005
         (332 letters)



>mm_chr6_54652240_54652972
          Length = 733

 Score =  607 bits (314), Expect = e-178
 Identities = 326/330 (98%), Gaps = 1/330 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccaccatgtgcgcaggacacttgctgtgcctctggcttggtagggggcatcatg 63
           |||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 533 ggaattccaccaggtgtgcaggacacttgctgtgcctctggcttggcagggggcatcatg 474

                                                                       
Query: 64  aaagtcacagagccattaccagcatcctctaagcaaccaattctctagagacagccaagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aaagtcacagagccattaccagcatcctctaagcaaccaattctctagagacagccaagg 414

                                                                       
Query: 124 acacaagtcgtcctgtgtcccagaaggtaagtgtgggtgggctatgtgctttgtttacaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 acacaagtcgtcctgtgtcccagaaggtaagtgtgggtgggctatgtgctttgtttacaa 354

                                                                       
Query: 184 ctcggatggatggagacctaactcttcactgcacctgtccacctgctcccaacacacatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ctcggatggatggagacctaactcttcactgcacctgtccacctgctcccaacacacatt 294

                                                                       
Query: 244 aagtcttgcccatccctacgttcctctcactgg-aaaaaaaaccagatttgattcaactg 302
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 293 aagtcttgcccatccctacgttcctctcactggaaaaaaaaaccagatttgattcaactg 234

                                         
Query: 303 tttcccaactggtgagttttaacatgcaac 332
           ||||||||||||||||||||||||||||||
Sbjct: 233 tttcccaactggtgagttttaacatgcaac 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 733
Length adjustment: 9
Effective length of query: 323
Effective length of database: 724
Effective search space:   233852
Effective search space used:   233852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)