BAC Information

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BAC

Clone NameMSMg01-071L13
Chromosome6 (Build37)
Map Location 108,277,441 - 108,277,681
singlet/doubletsinglet
Overlap geneItpr1
Upstream geneLrrn1, Setmar, Sumf1, LOC100043718
Downstream geneLOC677205, Bhlhb2, Arl8b, Edem1, EG627371, LOC639110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071L13.T7 (MSMg01no071_l13.b1)MSMg01-071L13.TJ (MSMg01no071_l13.g1)
ACCAG295437AG295438
length722707
length of high quality
(start - end)
75 (68 - 142)241 (72 - 312)
definitionCHROMAT_FILE: MSMg01no071_l13.b1 PHD_FILE: MSMg01no071_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:13 2005CHROMAT_FILE: MSMg01no071_l13.g1 PHD_FILE: MSMg01no071_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGNAATTC
CAGATTGTACCATGTAGTTTGTGCAGTTAGCTAATCGAGCAGTTAGGGCC
TAACTCTATTTTCCTACTCTAGAAACATGGAGATGGGGGGGTCTGTTAGT
GGCGGGGAGAGGAAGAGAAAGGCAGGTTAAGTCCATGATACCAGAAGGCA
ACCTTGGTTGGTTAGATGTCAACTCATCAAGTATTATCTGTTTGCACCTT
TACAGCACTTATCATGTTGTATTGCAATCTCTCGTTGGTCCCAGTCCTCC
TGCTCCTTACGCTGGTATCTGCCANATGANTGATTTCTGATCACCGTTAG
TGCTGTTTCCTGCTTATGTCTTTTCCACTGTACATGACATGAATTGTATG
TCTTTTACCCCTTTTGTTCAGCCTGACACTGCTGTCGTTCATTTTACCCC
CCATGCATTTACCCAACCTCATCTATAATCAATCCCTATTCTTTCCTATT
CCCATTTTTTCCCCCCCCTCTTTTCTACTCCCCCCCTTTCCCTGCTCGCT
TTCTTTATTCCCACCCCCTCTTTTTATTTTTTCTCCTTCCTCTTTTCTCC
CTCCCCGCCCTATCCATTTTTCTCTTTTTTTCCTCACCCTACTTATGTTC
CCCCCCCCCTCCTTTTCTATTTCCTCTATTCCCCTCTTATGATATTCATT
TTTTTTTGACTTGGGGGTGTTG
CATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGGGTTTGGTTAAAAAGTGTAAGCTTG
AAAATAAATTTCAAAGGTGGTTTTTAAGACTTTCTATTGAACAAAGAGTA
AAACCTGGAGACTGGAGAACGGTCGGACGTGCAGCGCCGACCTTCAGCAG
TGACGAGCCAGCACCTTGCTTCATGGACTTGATTAACGTGATGTCATTTC
CAGACATTGTGTTATTTGGTTTGAGAGGACATTTTCAAGTTGCTTCCAAT
TCCAGCTGTTGGGGTAGAATCGGCAACCCAGTAAAGCCGTCCTGTGCTCT
GTTGCAGGCCCCCTGGGCCAAAAGGGATCAGGCCTGAAAAACTGCATTGC
CTGAGTGAGTCCGTGCTGGTGACACAGAAGACTGAAGCCATAGGGGAAAT
TTGGTGATGTCATCTCTCTCGCTTTCCCCTTCCCCTTCCCACTTCCCAAT
CCTGAACTCTGTATATATAAAGTTATATTTTTTCTAGCGATATATATCAG
ACTACTTTTGACCTTTTTCTTGATTGGAATTTTTGTTTTTCTCCTTCCCT
TTCCTTATCAACAAGATCTTCTTTTTCCTGCAACCATACTTAAGAATTTC
ATTGTTTTGATGTCTTTCTCATCCCATGAATGTATACTTACCTCCCTCCT
TTGGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_l13.g1 MSMg01no071_l13.g1 CHROMAT_FILE:
MSMg01no071_l13.g1 PHD_FILE: MSMg01no071_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:13 2005
         (241 letters)



>mm_chr6_108277241_108277881
          Length = 641

 Score =  466 bits (241), Expect = e-136
 Identities = 241/241 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgggtttggttaaaaagtgtaagcttgaaaataaatttcaaaggtggtttttaagact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgggtttggttaaaaagtgtaagcttgaaaataaatttcaaaggtggtttttaagact 260

                                                                       
Query: 61  ttctattgaacaaagagtaaaacctggagactggagaacggtcggacgtgcagcgccgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctattgaacaaagagtaaaacctggagactggagaacggtcggacgtgcagcgccgac 320

                                                                       
Query: 121 cttcagcagtgacgagccagcaccttgcttcatggacttgattaacgtgatgtcatttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttcagcagtgacgagccagcaccttgcttcatggacttgattaacgtgatgtcatttcc 380

                                                                       
Query: 181 agacattgtgttatttggtttgagaggacattttcaagttgcttccaattccagctgttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacattgtgttatttggtttgagaggacattttcaagttgcttccaattccagctgttg 440

            
Query: 241 g 241
           |
Sbjct: 441 g 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)