Query= MSMg01no072_d18.b1 MSMg01no072_d18.b1 CHROMAT_FILE:
MSMg01no072_d18.b1 PHD_FILE: MSMg01no072_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:54 2005
(265 letters)
>mm_chr6_83512854_83513520
Length = 667
Score = 480 bits (248), Expect = e-140
Identities = 260/264 (98%), Gaps = 2/264 (0%)
Strand = Plus / Plus
Query: 4 gaattctttactttta-tcatgatataccttagctgctgcctgctctctcaa-caaggct 61
|||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 204 gaattctttactttaaatcatgatataccttagctgctgcctgctctctcaaacaaggct 263
Query: 62 ataaaataaaatccaagcttagaccttctaagcttggggcctccaaaacttttctagtgg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ataaaataaaatccaagcttagaccttctaagcttggggcctccaaaacttttctagtgg 323
Query: 122 ttatttaaatacagtgagtgatatttgaactaaaaagtatcaaataataaaccccttcca 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttatttaaatacagtgagtgatatttgaactaaaaagtatcaaataataaaccccttcca 383
Query: 182 cttaataatgccttaggaatgtatggctcagagctactaatcctgctaatagtcagcacc 241
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 384 cttaataatgccttaggaatgtatggctcagagctactaatcctgctgatagtcagcacc 443
Query: 242 ggtgtgcaggacagcaccgcagac 265
||||||||||||||||||||||||
Sbjct: 444 ggtgtgcaggacagcaccgcagac 467
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 667
Length adjustment: 9
Effective length of query: 256
Effective length of database: 658
Effective search space: 168448
Effective search space used: 168448
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no072_d18.g1 MSMg01no072_d18.g1 CHROMAT_FILE:
MSMg01no072_d18.g1 PHD_FILE: MSMg01no072_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:54 2005
(478 letters)
>mm_chr6_83619925_83620802
Length = 878
Score = 893 bits (462), Expect = 0.0
Identities = 474/478 (99%)
Strand = Plus / Minus
Query: 1 catgggaacagcagctctctgtcgccctgtccttgccatgttccatcacctcttgatccg 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 678 catgggaacagcagctctctgtcgccttgtccttgccatgttccatcacctcttgatccg 619
Query: 61 agttctctgaagcctgaatccccatttccttgagtgagctaatccagagcagttcagggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctttctctgaagcctgaatccccatttccttgagtgagctaatccagagcagttcagggc 559
Query: 121 tgcagatcttctgtttgagctgcctggctcagctcccctccctcctgccaccaggccttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgcagatcttctgtttgagctgcctggctcagctcccctccctcctgccaccaggccttc 499
Query: 181 atatgcccagtccaccatagtcatctcggcctcctccgctcctctccatgtgctcccctc 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 atatgcccaggccaccatagtcatctcggcctcctccgctcctctccatgtgctcccctc 439
Query: 241 tggttatgatagccttgtctactctaaacacctcttggctcaaagatttccttggagtgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tggttatgatagccttgtctactctaaacacctcttggctcaaagatttccttggagtgc 379
Query: 301 ttgttttcattcccagtgaccactgtgaactgcaaagaacatgcagtctcgggggttacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttgttttcattcccagtgaccactgtgaactgcaaagaacatgcagtctcgggggttacc 319
Query: 361 cagatagagggcaaaaaagaagaataagggcagtctgtctctggaaaagccaccagccac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cagatagagggcaaaaaagaagaataagggcagtctgtctctggaaaagccaccagccac 259
Query: 421 cagcaggagagcttatattcagtttttatgtgtgtgaaataaggtgaggtttgataag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cagcaggagagcttatattcagtttttatgtgtgtgaaataaggtgaggtttgataag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
