BAC Information

Click to search

BAC

Clone NameMSMg01-072H14
Chromosome6 (Build37)
Map Location 82,948,234 - 83,134,526
singlet/doubletdoublet
Overlap geneD6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1
Upstream geneTmem166, EG622198, Tacr1, Pole4, LOC100043412, Hk2, EG622318, Sema4f
Downstream geneC330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072H14.T7 (MSMg01no072_h14.b1)MSMg01-072H14.TJ (MSMg01no072_h14.g1)
ACCAG296009AG296010
length722753
length of high quality
(start - end)
369 (70 - 438)228 (74 - 301)
definitionCHROMAT_FILE: MSMg01no072_h14.b1 PHD_FILE: MSMg01no072_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:14 2005CHROMAT_FILE: MSMg01no072_h14.g1 PHD_FILE: MSMg01no072_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,134,158 - 83,134,526)(82,948,234 - 82,948,461)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAGACCGCGGAAT
TCCAGACTATTCCGAGCACAAAGTGAGACCCTCTCAAAAGACCTAAAGAA
AAGTCTGTGGAAAGAGGGAGTGGAACGGGCAAGATCCTGAAAGGGAGTGT
GTCCAGGCAGGCACACACTTGTCGAGGGGAGCAGTGAAAGCCACTGGGCA
GAGCAAGGTGGGCACCTACGGCAGTACTGACTCAACAGCAGGCAGGCAGG
CAGGCACTGCTCTGGCCCTTCCTTACACAACCATTCTACCACACTTCTCA
GCTCTAGTCCTCCAGGATGTTTTCCCTCCACGCCAAGCCTGGCTACCTGG
GAAAGCGCTGCAAACCTGCTGCAGCTGTGATTGCTGTCAAGTGCCTGCAG
TTTCTAACTAGGGGTCTAGAGCACTGAAAACTGTCTCTAATGAGTGCTGC
TTTGGCTTGGTCCCTGAACCTGATGGTCTCGTTTTCCTCAAGGTGATCCA
GAAGACAAACTGCCATTTCCTCTGGCCATTTCAGCCCCATGTTTACACAC
ACTTGTATTGTAGCACTTGGGGTGTCGTGGTCATGCAAGATAGTGGTAGG
GGTTTACAGCCCATTCTACGGCTCTTACACACACAGTAAATACCCCATCT
TTCTAAGCTTTTTTCTTCGCTGTGTGAGTATCATGATTTGCCCTACCTTA
CATATAGACTGCCCGGTCTGAC
CGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAACCTGAGCCCTTAGGAGGAGCAGCCA
GTGCTTGTCCCTGAAAGGATGCCATTTCTTCTGAGACAGCAGAATCAAGG
TTCCAACCTGAAGCCCAGCACCTCTGTGGGGATGACACGAGAATCTCTTC
AAACAAGAAAACTCTGCTGTTACTCTCCCCCAGAGTGTGTGAGTTAGGAG
GTGAGAAATGAAGGCTGGAAAGATGGCTCCACAGTGACAAGCACTGGCTG
CTCTCCCAGAGGACCCGGTTTTTGTTTGCCAACAATTCCCAGCACTCACA
AGGTGGATCACAGCCACCTGTAACTCCAGTTCCATGAAATTTACTGTCAT
CTTCTGGCCTCTGCGAACCCCTCACACTCTTGTTCCCCCTCACGTGCTCG
TATGTATTAAATACCTATATATACATAATTACCTGAACTAACCTTTTTTA
CATAGTAGTTTCACTAACCTTGCCCAGCGCCGAGAATACTGCCCTGTCTG
TACTCATTCTTGCAGAATCACGGCACGGCGTATCCTTATTGTATAATCTC
TGTGTTGTTGTACTAAAATCCGTCTCTTCTATATCTCGTTTATTTTTTAT
CCCGCTTTTCAAAGTCCCGGCCCCCTCCTTATTTTGTCTCTTTTTCACAC
CCTCATTCCCTTATGGCTCTTGTCTTCCCCTTTTTACTTCATATGAATTT
GTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_h14.b1 MSMg01no072_h14.b1 CHROMAT_FILE:
MSMg01no072_h14.b1 PHD_FILE: MSMg01no072_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:14 2005
         (369 letters)



>mm_chr6_83133958_83134726
          Length = 769

 Score =  683 bits (353), Expect = 0.0
 Identities = 365/369 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagtgagaccctctcaaaagacctaaagaaaagtctgtggaaagagggagtggaacggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aaagtgagaccctctcaaaagacctaaagaaaagtctgtggaaagagggagtggaacggg 510

                                                                       
Query: 61  caagatcctgaaagggagtgtgtccaggcaggcacacacttgtcgaggggagcagtgaaa 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 509 caagatcctgaaagggagtgtgtccaggcagacacacacttgtcgaggggagcagtgaaa 450

                                                                       
Query: 121 gccactgggcagagcaaggtgggcacctacggcagtactgactcaacagcaggcaggcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gccactgggcagagcaaggtgggcacctacggcagtactgactcaacagcaggcaggcag 390

                                                                       
Query: 181 gcaggcactgctctggcccttccttacacaaccattctaccacacttctcagctctagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gcaggcactgctctggcccttccttacacaaccattctaccacacttctcagctctagtc 330

                                                                       
Query: 241 ctccaggatgttttccctccacgccaagcctggctacctgggaaagcgctgcaaacctgc 300
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctccaggatgccctccctccacgccaagcctggctacctgggaaagcgctgcaaacctgc 270

                                                                       
Query: 301 tgcagctgtgattgctgtcaagtgcctgcagtttctaactaggggtctagagcactgaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgcagctgtgattgctgtcaagtgcctgcagtttctaactaggggtctagagcactgaaa 210

                    
Query: 361 actgtctct 369
           |||||||||
Sbjct: 209 actgtctct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no072_h14.g1 MSMg01no072_h14.g1 CHROMAT_FILE:
MSMg01no072_h14.g1 PHD_FILE: MSMg01no072_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:14 2005
         (228 letters)



>mm_chr6_82948034_82948661
          Length = 628

 Score =  441 bits (228), Expect = e-128
 Identities = 228/228 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacctgagcccttaggaggagcagccagtgcttgtccctgaaaggatgccatttcttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacctgagcccttaggaggagcagccagtgcttgtccctgaaaggatgccatttcttctg 260

                                                                       
Query: 61  agacagcagaatcaaggttccaacctgaagcccagcacctctgtggggatgacacgagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacagcagaatcaaggttccaacctgaagcccagcacctctgtggggatgacacgagaa 320

                                                                       
Query: 121 tctcttcaaacaagaaaactctgctgttactctcccccagagtgtgtgagttaggaggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcttcaaacaagaaaactctgctgttactctcccccagagtgtgtgagttaggaggtg 380

                                                           
Query: 181 agaaatgaaggctggaaagatggctccacagtgacaagcactggctgc 228
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaatgaaggctggaaagatggctccacagtgacaagcactggctgc 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)