BAC Information

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BAC

Clone NameMSMg01-072N07
Chromosome6 (Build37)
Map Location 117,174,025 - 117,174,373
singlet/doubletsinglet
Overlap genenone
Upstream geneD6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439, Cxcl12, LOC213422
Downstream geneEG640142, LOC100043777, LOC621462, EG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072N07.T7 (MSMg01no072_n07.b1)MSMg01-072N07.TJ (MSMg01no072_n07.g1)
ACCAG296276AG296277
length799715
length of high quality
(start - end)
358 (110 - 467)177 (201 - 377)
definitionCHROMAT_FILE: MSMg01no072_n07.b1 PHD_FILE: MSMg01no072_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:42 2005CHROMAT_FILE: MSMg01no072_n07.g1 PHD_FILE: MSMg01no072_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCTTTTCTCTCTTTTTTTCTTTCTCTTCCTTTTTTTTTTTTTTTATTT
CTTATCTTTTTTTTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCTTCCATAATGACCGAATTGATCCAAGACCGC
TTCTATGGAAGGCTTTGCTTATCTTGCTACAAAATTTACTATAAATTGAC
ACGGTAGCAAGTCGTTTCTGGAGTCTCTCCACGTTTTCCTAGTTGTTTGT
TTTTCTAATATTAAAATGTCTTAATTACAAATACTCTGTAAAACCTGACA
GCAATTCGTCTTACTTGGCTCTTCAATTAAAGTCGTATCACTACTCCGGG
CCTTTGCATCCTCACACACTTCAACCTGTGAATTTTCATATACAGGGGAA
AATTTATTTGACTTCATTTTTTTAAGTCACCTATTTTTATTTGATATGTA
TGATTTTTTTTTTGCCTACAAGTATGTATGTTCACTACCTATATGCCTGA
TGTCCAGCGAAGCCTTAAGGATACATTGCAACTGTTTACCACCATAGTTA
CATATTGTTTTTGACTCACCATGTGTTAATTGTTTTTCTAACCTCAGTTT
CTCCATGATATCATCATGTGCTCATAATTAGCTGAGCATCTTTTATCTAG
CCCCTACACTCCTGTTTTTCAGCTTACTTTCGTATTTTTTTTGCTTTTTT
GCTCACACTCATCCTTGTTACCCTATTCCCTGCTTTCCATTATTTATTTT
TCATTTATTCTCCCCAACTCCTCTGACTAATTAAGTATTTGTATATTTG
AATGCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTCATCTGGTAGTTCTTTCAAGTCATT
TCCATGTGCGATTGCTTTGATAAGAGTGATTTGCGCAACAGATATGCTGT
TCTTCATACTGCGTCTATTTCTTCCTTTGGACTTGTACACCTGTACTTAG
TTTTATGGCTGAGTCTTTAACTTTCTTTCTCTCTTTCTCTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCCCTCTCTCT
CTTTCTTTCTTTCTTTCTTCCTTTGTCTTTCTTTCTTTTTTCCTTCCTTC
CTTCCTTCCTTCCTTCCTTCCTTCCGTCTGTATTTCCTTCATATTTCTTA
TTTTTACTATCCTAATCACCCGCTCTTGTCTCATTGCTAATAATTTGATG
TTCCTGAGTCCTATACGGATGAGTGCCCTTCCCTCTGTGTGACTATTATT
TATGTTTTACGCCTTCTCATTGGACTCCTCCTCTTATTGTCCTGTTATAT
CCTCCCTCTCTTGTTTTCCCCCTGTTTCTAAACCCCCCCCTCCCTTTGTG
CATTCTTCTGGCATATCTGTTGTCCCTTCCTTTATAATCATCCTCCTGGC
CTCTTTCACTTTGTTTTCTATTTTTTCTGCCTGTTCGTTATTTGCCCCCT
ACTCTTTTTGCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_n07.b1 MSMg01no072_n07.b1 CHROMAT_FILE:
MSMg01no072_n07.b1 PHD_FILE: MSMg01no072_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:42 2005
         (358 letters)



>mm_chr6_117173821_117174578
          Length = 758

 Score =  636 bits (329), Expect = 0.0
 Identities = 344/349 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttccataatgaccgaattgatccaagaccgcttctatggaaggctttgcttatc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gaattcttccataaagaccgaattgatccaagaccgcttctatggaaggctttgcttatc 494

                                                                       
Query: 65  ttgctacaaaatttactataaattgacacggtagcaagtcgtttctggagtctctccacg 124
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 493 ttgctacaaaatttactataaattgacacgggagcaagtcgtttctggagtctctccacg 434

                                                                       
Query: 125 ttttcctagttgtttgtttttctaatattaaaatgtcttaattacaaatactctgtaaaa 184
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttttcctagttgttggtttttctaatattaaaatgtcttaattacaaatactctgtaaaa 374

                                                                       
Query: 185 cctgacagcaattcgtcttacttggctcttcaattaaagtcgtatcactactccgggcct 244
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cctgacagcaattcctcatacttggctcttcaattaaagtcgtatcactactccgggcct 314

                                                                       
Query: 245 ttgcatcctcacacacttcaacctgtgaattttcatatacaggggaaaatttatttgact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttgcatcctcacacacttcaacctgtgaattttcatatacaggggaaaatttatttgact 254

                                                            
Query: 305 tcatttttttaagtcacctatttttatttgatatgtatgattttttttt 353
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tcatttttttaagtcacctatttttatttgatatgtatgattttttttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)