Query= MSMg01no073_a05.b1 MSMg01no073_a05.b1 CHROMAT_FILE:
MSMg01no073_a05.b1 PHD_FILE: MSMg01no073_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:57 2005
(319 letters)
>mm_chr6_19879173_19879890
Length = 718
Score = 549 bits (284), Expect = e-161
Identities = 308/318 (96%), Gaps = 5/318 (1%)
Strand = Plus / Plus
Query: 4 ggaattcatgggctctgaattgacgtggtatataactatgaatgcagttcaaataatttg 63
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 204 ggaattcatgggctctgaattgacgtggtatataactatgaatgcatttcacataatttg 263
Query: 64 gaaataaatcaatatttccc--ataaatacatttggtataagtataattgagtatatcct 121
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaaataaatcaatattt---tgataaatacatttggtataagtataattgagtatatcct 320
Query: 122 aaaatatatggaagtggttcctattgatctattaaatggacagctattccagtgtatctg 181
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 aaaatatatggaagtggttcctattgatctattaagtggacagctattccagtgtatctg 380
Query: 182 gttatgtgctagaagatctctgaatgtagtagttaaacatttttcttaatattcacaata 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttatgtgctagaagatctctgaatgtagtagttaaacatttttcttaatattcacaata 440
Query: 242 gttctgaataaacaacaatggcgatatcattgtgtggtaaagttattttcttttaaatgc 301
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 gttctgaataaacaacaatggcgatatcattgtgtggtaaagcaattttcttttaaatgc 500
Query: 302 catatagacagggacagt 319
||||||||||||||||||
Sbjct: 501 catatagacagggacagt 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 718
Length adjustment: 9
Effective length of query: 310
Effective length of database: 709
Effective search space: 219790
Effective search space used: 219790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no073_a05.g1 MSMg01no073_a05.g1 CHROMAT_FILE:
MSMg01no073_a05.g1 PHD_FILE: MSMg01no073_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:57 2005
(583 letters)
>mm_chr6_19963402_19964388
Length = 987
Score = 1035 bits (535), Expect = 0.0
Identities = 573/587 (97%), Gaps = 4/587 (0%)
Strand = Plus / Minus
Query: 1 tagtatttctgtagattccaatctcactgacctctga-atataattgttttctccataag 59
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 787 tagtatttctgtagattccaatctcactgacctctgacatataattgttttctccataag 728
Query: 60 gcgatataatacaacccatgcttggttttctagagttgtccgtgctctaacctaatttaa 119
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 727 gcgatataatacaacccatgcttggttttctagagttgcccatgctctaacctaatttaa 668
Query: 120 tgaattgaagaggaatagttttgatgtcatcaacctgaatgatgatttccttttaggaaa 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 667 tgaattgaagaggaatagttttgatgtcatcaacctgaatgatgatttccttttagaaaa 608
Query: 180 gacaatgaagtaatctgtgtacaggtttttcaatgaatcaacaaagtaaatgttaaacat 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 607 gacaatgaagtaatctgtgtacaggtttttcaatgaatcaacaaagtaaatgttaagcat 548
Query: 240 gcagtacagtatgttactattccatcttaacttcccttgtgaattaaagtaattaggaag 299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 547 gcagtacagtatgttactattccatcttaacttcccttgtgaattaaagcaattaggaag 488
Query: 300 ctgaaatggttgttaaattggcaggcttaaactactctcaaaatcaaacaagatacttta 359
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ctgaaatgattgttaaattggcaggcttaaactactctcaaaatcaaacaagatacttta 428
Query: 360 cttggaatataattaagaaaatatattagttgttattttcttaaggtcattttagtactt 419
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 427 cttggaatataattaagaaaatatattagttgtcattttcttaaggtcattttagtactt 368
Query: 420 tatctggacttggttttataaagaaaatccatgatttaaattttgaggacttatggtgat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tatctggacttggttttataaagaaaatccatgatttaaattttgaggacttatggtgat 308
Query: 480 caagaatatggaaacagttttaattttcttttctttcatctt---aaaaaaaagaaagaa 536
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 307 caagaatacggaaacagttttaattttcttttctttcatcttaaaaaaaaaaagaaggaa 248
Query: 537 atgaaagtaaaatctgtaatttgtattgcagagagagctgtgttgtg 583
||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 247 atgaaagaaaaatctgtaatttgtattgcagagagagctgtgttgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 987
Length adjustment: 10
Effective length of query: 573
Effective length of database: 977
Effective search space: 559821
Effective search space used: 559821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
