BAC Information

Click to search

BAC

Clone NameMSMg01-073H05
Chromosome6 (Build37)
Map Location 91,880,005 - 91,880,247
singlet/doubletsinglet
Overlap gene4930590J08Rik
Upstream geneNup210, Hdac11, Fbln2, LOC665716, Wnt7a, LOC100043659, LOC625420, Chchd4, Tmem43, Xpc, Lsm3, Slc6a6, Grip2, C130022K22Rik
Downstream geneFgd5, Nr2c2, Mrps25, Zfyve20, Trh, LOC665805, Prickle2, LOC545866, A730049H05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073H05.T7 (MSMg01no073_h05.b1)MSMg01-073H05.TJ (MSMg01no073_h05.g1)
ACCAG296748AG296749
length706711
length of high quality
(start - end)
243 (67 - 309)387 (76 - 462)
definitionCHROMAT_FILE: MSMg01no073_h05.b1 PHD_FILE: MSMg01no073_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:31 2005CHROMAT_FILE: MSMg01no073_h05.g1 PHD_FILE: MSMg01no073_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXCTATTCAGAGAGAGATCCGCGGAATTC
TTGCCATTGCTGAAGTCTGAGCTCACAGGCACCTGAGAGTCCTTGGTGTT
CCTATGAGAGTTTTGAGCTTTGGTAAACACCTTCTTTCCTTGCATCTCAG
AAGTTCCCTATGCCTCCGTTATGTGGCATGAACCAGGCTGGACTCATAAC
TGGTGTGTGCTCTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTCGAGACAG
GGTTTCTCTGTATAGCCCTGGCTGGCCTGAAACTTACTTTGTAAACCAGG
CTGGCCTCGAACTCTTAAATCCGCCTACCTCTGCCTCCCAAGTGCTGGGA
TTAAAGGTTTGTGCCACCACTGCCTGGCTTGGTGTGTGCTCTTTCATCCC
TCCCATTAAACTGAAAGTTCCAGACTGGAAAGAGGCTTCATTTCTGCATC
TCCTGCGGTTATTGCTATACACTGCAAGTGCTAACATAGGTTTGCTAAAC
TCTTTATTAAATTAATGAAAGATACATGGTGTCTGGCGAAAATGCATAGG
GTAAAGCAGCCACGATGCTGTTCCTTGGTCATATCAGGAATCTTCTTCCC
TTACTGTGGGTCCACTATGATTGGGCTCTGCCCCCTGTCCTCGCGCTACT
GTAATTGCACTCTTCTTGTCTTCGAACCCCTGATACCCTATTGCCTGTTA
CGTCAA
TCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAAGCTCGTACAACCACTCTGGAAA
TCAATCTGGCGGTTCCTCAGGAAATTGGACATAGTACTACTGGAGGATCC
CGCAATACTTCTCCTGGGCATATATCCAGAAGAGGTCCCAACCGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAATCCAGATGCCCCTCACCAGAGGAATGGATACAGAACAT
GTGGTACATTTACCCAATGGAGCACTACTCATCTATTAAAAAGACTGATC
TTATGAAATTCCTACGCAAATGTATGGATCTGGAGGGCACCATCCTGAGT
GAGGTAACCCCCTCTCAAAGGATCTCTAACAATATGCACTCTCTGATAAT
TGTATAGCCCAGAAACTTACGATACTCTCGATTTTCGATACTTTTTGTTT
AAATCTGATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_h05.b1 MSMg01no073_h05.b1 CHROMAT_FILE:
MSMg01no073_h05.b1 PHD_FILE: MSMg01no073_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:31 2005
         (243 letters)



>mm_chr6_91879882_91880525
          Length = 644

 Score =  433 bits (224), Expect = e-126
 Identities = 239/244 (97%), Gaps = 2/244 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgagctcacaggcacctgagagtccttggtgttcctatgagagttttgagctttggtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ctgagctcacaggcacctgagagtccttggtgttcctatgagagttttgagctttggtaa 307

                                                                       
Query: 61  acaccttctttccttgcatctcagaagttccctatgcctccgttatgtggcatgaaccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 acaccttctttccttgcatctcagaagttccctatgcctccgttatgtggcatgaaccag 247

                                                                       
Query: 121 gctggactcataactggtgtgtgctcttttttttttttt-ttttttttttgggttttcga 179
           ||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||
Sbjct: 246 gctggactcataactggtgtgtgctctttttttttttttgtttttttttt-gtttttcga 188

                                                                       
Query: 180 gacagggtttctctgtatagccctggctggcctgaaacttactttgtaaaccaggctggc 239
           ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 187 gacagggtttctctgtatagccctggctgtcctgaaacttactttgtagaccaggctggc 128

               
Query: 240 ctcg 243
           ||||
Sbjct: 127 ctcg 124


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 644
Length adjustment: 9
Effective length of query: 234
Effective length of database: 635
Effective search space:   148590
Effective search space used:   148590
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)