BAC Information

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BAC

Clone NameMSMg01-073J14
Chromosome6 (Build37)
Map Location 117,654,970 - 117,771,556
singlet/doubletdoublet
Overlap geneEG640370, EG621705
Upstream geneC230095G01Rik, LOC100043439, Cxcl12, LOC213422, EG640142, LOC100043777, LOC621462
Downstream geneLOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26, Cacna1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073J14.T7 (MSMg01no073_j14.b1)MSMg01-073J14.TJ (MSMg01no073_j14.g1)
ACCAG296856AG296857
length686743
length of high quality
(start - end)
269 (48 - 316)234 (133 - 366)
definitionCHROMAT_FILE: MSMg01no073_j14.b1 PHD_FILE: MSMg01no073_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:42 2005CHROMAT_FILE: MSMg01no073_j14.g1 PHD_FILE: MSMg01no073_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,654,970 - 117,655,232)(117,771,334 - 117,771,556)
sequence
TATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTCACTCTCCCAATATAAAGAACCTGCATGCTGTTTAGTGTGG
AAGAGGGGCCTTTTGTCTTACCGGTGTACACAGGCTCTGGTGGATTTTCG
TCTAATAGAATCATAGTCAGAATTTGCATATTCAGACCCTGATGTGACAT
AGTTGCTAGGCTCTGCCTGAACTCATGAGGCAGTAGGGGGTACCTGGGGT
GTTCAGATTCAAGGTCCACAAGGTTAAGGTGAAAACTCTGGGTTTTGTTG
ACACCCCCTCCCATCGATATATTCACCTCAGAGGGCAAGTGGCCTCACAG
TGCTGCATTGAGAACATTCACTTGTAAACTGCTACAAGTCCAAGCTCTCT
CCCCCCATCCTATCCTGTGATTTTTGTCTGTCGAGCGACAGGCCTTTTCA
ACTATCCATCCCTCTTGACACATAAAATCTGTTCTGATAGTGCCTTGCAA
TGGAGCGCAACAGCCTACATTTATATCACCTGCTATCCTGAAGACATTTT
ATCTGACCAAAATCATGCATCCAATGGGACTTCTATTTTGCTTCCGCCTT
CACCTTTTTTGTCTCTTCCTTCTGAGTTTCACCAGATACTTGTCATTTCC
TCTTCTTTTTCGTACCCATATGTTTCCTCGAATTTG
TCTTCTTTTTCTTTTTTTCTCCTTCTTTTCCTCTTTTTCCCTNACCGTTC
CAANNACTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTG
GCCTCGAACTCATAATCCACCTGCCTCTTCCTCCCGAGTGCTGGGATTAA
AGGCGTCCACCACCACGCCCAGCTTATATGTATATATTTTAAGTAAACAT
AAAATAACATTTCTTCAGGCTGGGTTTTATTTTAATTCCTGGCCAGCATC
CTTAAGTTGGGATATTTAAGTGGGCTCATTTAATATGCTTCGGTTTTTGT
TTTGTTCTGCTTTTTCTCTCATTATAACAAGCTAAGAACCACTTGGCAGG
TTTGCGTTTGATTTTTTTTCTGCCAACTCTGCAAGCGCCACCTGTCTTGA
GTGTATTTGTAATGAAATCATGGTGAACACTCTGATCTTCATGTCTGGGT
AACTGTTGTCAAGGTGATGTGGATGGTTTCACCAACTGGGCTAAAGACTG
CAGTACTCTGTATTGGTTCATTTCATTATTACCAGCTTACTTCAGCATGA
CAACCATCGATAGCATCCTATTGTGTCCTATTTCTTTTCTTTTCGTTTCC
TCACACGGAATTAATATCTACCCCTACGTGACCCGACATACGCCCATCTC
CCTTTGTATGGTTGCCCCATTACTAACCACTGTTACCTTGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_j14.b1 MSMg01no073_j14.b1 CHROMAT_FILE:
MSMg01no073_j14.b1 PHD_FILE: MSMg01no073_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:42 2005
         (269 letters)



>mm_chr6_117654766_117655435
          Length = 670

 Score =  455 bits (235), Expect = e-132
 Identities = 256/263 (97%), Gaps = 1/263 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcactctcc-caatataaagaacctgcatgctgtttagtgtggaagaggggcc 63
           ||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcacacttcacaatataaagaacctgcatgctgtttagtgtggaagaggggcc 264

                                                                       
Query: 64  ttttgtcttaccggtgtacacaggctctggtggattttcgtctaatagaatcatagtcag 123
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 ttttgtcttaagggtgtacacaggctctggtggattttcgtctaatagaatcagagtcag 324

                                                                       
Query: 124 aatttgcatattcagaccctgatgtgacatagttgctaggctctgcctgaactcatgagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatttgcatattcagaccctgatgtgacatagttgctaggctctgcctgaactcatgagg 384

                                                                       
Query: 184 cagtagggggtacctggggtgttcagattcaaggtccacaaggttaaggtgaaaactctg 243
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagtagggggtacctggggtgtccagattcaaggtccacaaggttaaggtgaaaactctg 444

                                  
Query: 244 ggttttgttgacaccccctccca 266
           |||||||||||||||||||||||
Sbjct: 445 ggttttgttgacaccccctccca 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 670
Length adjustment: 9
Effective length of query: 260
Effective length of database: 661
Effective search space:   171860
Effective search space used:   171860
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no073_j14.g1 MSMg01no073_j14.g1 CHROMAT_FILE:
MSMg01no073_j14.g1 PHD_FILE: MSMg01no073_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:43 2005
         (234 letters)



>mm_chr6_117771042_117771675
          Length = 634

 Score =  377 bits (195), Expect = e-109
 Identities = 216/223 (96%), Gaps = 1/223 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtagaccaggctggcctcgaactca-taatccacctgcctcttcctcccgagtgc 59
           ||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||
Sbjct: 515 actctgtagaccaggctggcctcgaactcagaaatccacctgcctctgcctcccgagtgc 456

                                                                       
Query: 60  tgggattaaaggcgtccaccaccacgcccagcttatatgtatatattttaagtaaacata 119
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tgggattaaaggcgtccgccaccacgcccagcttatatgtatatattttaagtaaacata 396

                                                                       
Query: 120 aaataacatttcttcaggctgggttttattttaattcctggccagcatccttaagttggg 179
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aaataacattttttcaggctgggttttattttaattcctggccagcatccttaagttggg 336

                                                      
Query: 180 atatttaagtgggctcatttaatatgcttcggtttttgttttg 222
           |||||||||||||||||||||||||| || |||||||||||||
Sbjct: 335 atatttaagtgggctcatttaatatgttttggtttttgttttg 293


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)