BAC Information

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BAC

Clone NameMSMg01-074J17
Chromosome6 (Build37)
Map Location 51,281,934 - 51,282,418
singlet/doubletsinglet
Overlap genenone
Upstream geneOsbpl3, Cycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877
Downstream geneEG625167, Nfe2l3, Hnrpa2b1, Cbx3, Snx10, LOC100041820, Skap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074J17.T7 (MSMg01no074_j17.b1)MSMg01-074J17.TJ (MSMg01no074_j17.g1)
ACCAG297622AG297623
length715666
length of high quality
(start - end)
226 (48 - 273)485 (57 - 541)
definitionCHROMAT_FILE: MSMg01no074_j17.b1 PHD_FILE: MSMg01no074_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:01 2005CHROMAT_FILE: MSMg01no074_j17.g1 PHD_FILE: MSMg01no074_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTGCTGGGCAGTGGTGGTGCACGCCTTTAATCCTAGCACTTGG
GAGTCAGAGGCAGGCAGATTTCTGCCTGGGCTACCCAGAGAAACTCTGTC
TAGAAAAACCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGTTAGTTAGTTCCTGGTCTTCTGTCTGGTGTTACCATCC
ACTCACCCCACGCTATCATCTCAAGTTAAACGGTCTCCTTTGCTAAGAAA
GCATTTTAACTCCATGAAGTTTTTTTTCTGTATGGGATGGCTCTGATGCT
ATCATTGCCATTTTTTTTGTTTCCCCCCCCCCCCCCCTATTCTTTTTTTA
GCTCTTTTTCTTTTTTTTTTCCCCCCCCTCCTTTATATTTATTTTTCCGC
GCCTTGCTTTCTGTACTCTTTCTTTTCTATGATTTCGCTTTCTTATCTTC
CTTTATTTATTTTCTGCTTTTTTCTTTTGTTTTTTTTTTCCTCTTCTTCT
TCTTTCTTTCCTTTTTTTCCCCTGTCCTCTTCTTTCCTTTTACTTCCTTT
TCTTTCCTCTTGACTTGTTTCTTTTCTTCCTCTTCTCTTCCTTTGACTAT
ATCTTATTTTATCTTTTTTTTTTCTTTTTCTTCTTTTTTCTTCTCTTATC
TTTTTAGCTCTCCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCAGAGGACATTCTGTGACTCGTGCCAAGACTGGCCAGTGACCCC
CACTTCCAGTTTATGCTCTTGAGCAGCGGAATGGGGGATCTGCTATTTGA
CAGCTATTCAGAAACATTCTACCCATGCCTGGACCCCACCTCCTGAATTT
CCAGTCCAGTGGCTTCAAAAGTCTGTCCTTCACAGGGGGTGTAGGTCCTG
AAGACCCATTGAGTAGTCTGATCCTGGGGTAGCCCTAGATCTGTGTAGCC
CCTTCAATGGTGCCAAGGAACAGAAATGCCCAGCATAGGGGAACTGAGGA
CGCCACCTTGCAGTCTGTACGCATTGCCAAGGACAGGAGACACCTCCCCA
CACTTAGTGTATGAGGCCTGGAGTCAGTATGGTCTCAGACGCGGGGCAGG
CAGCCTCTCCTCAACTCGCCTTGGTGTACTTGTGTGTAAGATCCAACTTT
GTAAGCTGCTGGGAAAAGTTCAGGGTTCCTCAAACAGCACAGAGCCTGGC
ACCGAATGAATGATTAGGCCACACTCGCGGCTGCATTGGTGCTCCCTGAG
CAGTGTCTGGGGCCGCAGGCTTGTTGATGCAACTTGCAACTAACAACATT
ATAGTAGATACAGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_j17.g1 MSMg01no074_j17.g1 CHROMAT_FILE:
MSMg01no074_j17.g1 PHD_FILE: MSMg01no074_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:01 2005
         (485 letters)



>mm_chr6_51281734_51282618
          Length = 885

 Score =  868 bits (449), Expect = 0.0
 Identities = 476/485 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaggacattctgtgactcgtgccaagactggccagtgacccccacttccagtttatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaggacattctgtgactcgtgccaagactggccagtgacccccacttccagtttatgc 260

                                                                       
Query: 61  tcttgagcagcggaatgggggatctgctatttgacagctattcagaaacattctacccat 120
           |||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||
Sbjct: 261 tcttgagcagcggaatgggggatctgctatttgacagctatttagaaacaatctatccat 320

                                                                       
Query: 121 gcctggaccccacctcctgaatttccagtccagtggcttcaaaagtctgtccttcacagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctggaccccacctcctgaatttccagtccagtggcttcaaaagtctgtccttcacagg 380

                                                                       
Query: 181 gggtgtaggtcctgaagacccattgagtagtctgatcctggggtagccctagatctgtgt 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtgtagctcctgaagacccattgagtagtctgatcctggggtagccctagatctgtgt 440

                                                                       
Query: 241 agccccttcaatggtgccaaggaacagaaatgcccagcataggggaactgaggacgccac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 agccccttcaatggtgccaaggaacagaaatgcccagcataggggaactgaggacaccac 500

                                                                       
Query: 301 cttgcagtctgtacgcattgccaaggacaggagacacctccccacacttagtgtatgagg 360
           |||||||||||||| |||||||||||||||||||||||||  || |||||||||||||||
Sbjct: 501 cttgcagtctgtacacattgccaaggacaggagacacctcttcatacttagtgtatgagg 560

                                                                       
Query: 361 cctggagtcagtatggtctcagacgcggggcaggcagcctctcctcaactcgccttggtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctggagtcagtatggtctcagacgcggggcaggcagcctctcctcaactcgccttggtg 620

                                                                       
Query: 421 tacttgtgtgtaagatccaactttgtaagctgctgggaaaagttcagggttcctcaaaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacttgtgtgtaagatccaactttgtaagctgctgggaaaagttcagggttcctcaaaca 680

                
Query: 481 gcaca 485
           |||||
Sbjct: 681 gcaca 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)