BAC Information

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BAC

Clone NameMSMg01-074K16
Chromosome6 (Build37)
Map Location 93,275,785 - 93,276,128
singlet/doubletsinglet
Overlap genenone
Upstream genePrickle2, LOC545866, A730049H05Rik, LOC384461, LOC100043253
Downstream geneLOC665831, Magi1, LOC100043262
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074K16.T7 (MSMg01no074_k16.b1)MSMg01-074K16.TJ (MSMg01no074_k16.g1)
ACCAG297668AG297669
length701743
length of high quality
(start - end)
527 (44 - 570)81 (72 - 152)
definitionCHROMAT_FILE: MSMg01no074_k16.b1 PHD_FILE: MSMg01no074_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:06 2005CHROMAT_FILE: MSMg01no074_k16.g1 PHD_FILE: MSMg01no074_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGATAGTATCCACNAGAGACTGTGTAATGATCCACTCCCAAAGCATC
TATGTCCTAATCATTAGGGCACATGAACTTGGGAAAAAGACTCAGTAGAA
ATGCTTACATTAAGGCTTTTTAAATGAATTTGTCCTTTAACCACAAGAGT
ACTTGTAAGAGAGAGGTGGCGGAAGAGTCACTATGGCAGACACAGAAATC
AAAGGTTGAAGTAAGATCCTACACTGTTGGCTTTGAAAAGAGAGCAAAGT
ATGAAATAATGAAGCTTTTTAGAAATGAAAGGCAAGAAAATTATTTCTAA
CTCAAGCATCCAGAGCAACTATAGCCCTCCTAACCTTCTGACTTTAGCCC
ATTAAAACCAATTTCGAATTTCTGAGTTCTCAAAATATATAAAAGAATAA
AAATACATCATTTAAAACCACCACATTTTGGATAAATTGCTACAGAAACC
ATAGAAAGCAAATCTAGAGTTCACTAGAGAATCGGCATAGCACTTCTATT
TTAATTTGTTTGTTTAATGTGCCCACATGGCCTTAAATAGCTGCCAGAGA
GTCTGAGAGACATGCGCTGCTTTTTGTAATGTATCAGGAACTCCCACGAG
GAGCACAATATTGACAAACGTCTGCTTCAACCGAGCAATAGTTCTCCATC
C
CATACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGGCCAACCTGGCCTATGGATCGAGATC
TTATCTCACTAGGGAAATCCCGAGGGAGGTCGAAATGAATGGATGGATGC
ATGGATGGATGGATCCACCCCCTCTTCCCTTCTCCTCCCTCTNCCCCCCC
CTTCCCTTCCTCTTCCCTCCCCCCCCCCCCCCTTTTCCCCCCCTTTTCCC
CCCCCCCCCCCTCCCCCTCCCTCTCCCTCTCCCTCCCTCTCCCTTCCCCT
TCTTTATCCCCCCCTCTCTCTTTCCCCCCCTCTCCCCCCCCCCCTACCCC
CTCCTCTTCTTTTTTTTTTTCCCCCCCCCCCCCCCCCCCTTTATCCTCCC
CCCCCTCCTCCTTTCTTCTCCCCCCCCCCTTTTTACCCCCCTTCCTCTTC
CTCTTGTCCTCTCCTCCTCTCCCCTCCCCCTCCCCCCCCCCTTCCCCCTT
CCCCCTCCCCCCCCCCCCCCCTACACCCCCTCCCCCCACCTCCTCCCCCC
CCCCCCCCCCCCCCCTCCCCTTTCTTCTCCATCTCCCCCCCCCTCTCCTT
TTTCTTTCCCTCTTCCCTCCTCCTCCCCCTCCCCCCCCCTCCCCCCCCCT
CCCCCCCCTCCCCCCCCCCCCCTTCCCCCCCCCCCCCTCCCCCCCTCCCC
TTTTCTCCCCCCCCCTCCCTCCTCTCCTCTTTCTTCCCTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_k16.b1 MSMg01no074_k16.b1 CHROMAT_FILE:
MSMg01no074_k16.b1 PHD_FILE: MSMg01no074_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:06 2005
         (527 letters)



>mm_chr6_93275785_93276711
          Length = 927

 Score =  629 bits (325), Expect = 0.0
 Identities = 339/344 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagatagtatccacnagagactgtgtaatgatccactcccaaagcatctatgtcc 64
           |||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||
Sbjct: 344 gaattcagatagtatctacaagagactgtgtaatgatccactcccaaaacatctatgtcc 285

                                                                       
Query: 65  taatcattagggcacatgaacttgggaaaaagactcagtagaaatgcttacattaaggct 124
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 284 taatcattagggcacatgaacttgggaaaaagactcggtagaaatgcttacattaaggct 225

                                                                       
Query: 125 ttttaaatgaatttgtcctttaaccacaagagtacttgtaagagagaggtggcggaagag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 ttttaaatgaatttgtcctttaaccacaagagtacttgtaagagagaggtggcggaagag 165

                                                                       
Query: 185 tcactatggcagacacagaaatcaaaggttgaagtaagatcctacactgttggctttgaa 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 164 tcactatggcagacacagaaatcaaaggttgaagtaaaatcctacactgttggctttgaa 105

                                                                       
Query: 245 aagagagcaaagtatgaaataatgaagctttttagaaatgaaaggcaagaaaattatttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 aagagagcaaagtatgaaataatgaagctttttagaaatgaaaggcaagaaaattatttc 45

                                                       
Query: 305 taactcaagcatccagagcaactatagccctcctaaccttctga 348
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  taactcaagcatccagagcaactatagccctcctaaccttctga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)