BAC Information

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BAC

Clone NameMSMg01-075E06
Chromosome6 (Build37)
Map Location 67,186,402 - 67,186,701
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041916, Tpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310
Downstream geneLOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igk, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075E06.T7 (MSMg01no075_e06.b1)MSMg01-075E06.TJ (MSMg01no075_e06.g1)
ACCAG298125AG298126
length728705
length of high quality
(start - end)
193 (71 - 263)293 (75 - 367)
definitionCHROMAT_FILE: MSMg01no075_e06.b1 PHD_FILE: MSMg01no075_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:53 2005CHROMAT_FILE: MSMg01no075_e06.g1 PHD_FILE: MSMg01no075_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACAACACCGCGGAAT
TCTTTCTCTTTCCCTTTGCCTGCATGTTTGTCATTGATATGTAGGAAGGC
TGCTGGTTTTGTATGTTCATTTTGTATCCTGCAATGTTGCTAAAAGTGTT
TATCAGTTCTGAGTTTTCTGATAGAGTCTTTACGCTTGCTGGCTGGCTGG
CTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTCGCTTGCT
TCCTTGCTTGCTTACACAAGGCCTCTCTATGCAGTACTGACTGGGCTGCA
CCTGCCGTGCAGAGACTTTTCTCTCCTCTAACTCACACCTACTGTCCTGT
CTCTGTCTTCTTATTCTTACCACCATCACACCCCGCTAATTTGTATGTAT
CGTTTGCTGCTTCCCCCCCCCTCCTGCACCTTGACCCCTTGTCTTACTTG
CCCCCCCTGTTATCTCCTTCCTCTATTTCACTCCACTAGTTAAGACCCTT
TATGCCTCTATCGTCTCCCCCCCTGCTACACTATATTTCCCTTTGATCCG
CTCCCTGTTCCTACCTTTTTTTGCCTCCCCTTTTTTCTCCCCTTACCTCT
ACGGCATTTTTTTTTCTCCCCCCGTCACCCTTCTATATTCCTTTTTCCCT
TCATTTTTACCCTTCTCCCTCCTCTTTCTTCCCCCTTTTTTTCCCCCATC
TCACCTCCCTCTTCTCCTCTTTTTTTTN
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGACAAACCCTGTCTCGAAAAAAA
AAAAAAAAACAGAAAAAAAAACAACAAACAAACAAAAAAATGTTTGAGTC
TTTCCAACTTTTTAATACTTGTAAATGTTTTAATCTTCCCTACCCAGTAA
AACTTTTGTATCCTCAAAGGCCCACTGCTCTCTAGTCTAGAAAATTGTTG
GCTTGGTACAGTTGTCCTTTTCTCCTTGAAACAGAGACCCCTTGCTGTTA
TTTACATTTCTTAGGCACAAGTTCTTTTCAGAGTAGTCAATTAAATAAGA
CTGTGAGGACCCCAGCCAATGGGCAATTGCAAATGGTCACCACCTTCTTT
AGAATAAAAACCAAGAGCACCCCCCCCAGCACACCTTCTTGGTCAAAAGT
ATGTTTGCTATGTCCAGGCACAACAATTGAAATGATCAACTCTTTCTTTG
CTACCCCAAACTTACTTTAACTCCTGTCGTGTTTTCTACAATTACACAGA
TTGCCTTCTGGATTATATAAACAATGTGCATACAACATCCCGCGTATTCC
AAATGCTATGTTAAATTTCCCTCATTATTTTATGGATTTCTCAAGGTCAG
CCCACGATTCTCTCCCCTCTCATTTCATACTCTACAAGGAATGTCGGCTA
ATTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_e06.g1 MSMg01no075_e06.g1 CHROMAT_FILE:
MSMg01no075_e06.g1 PHD_FILE: MSMg01no075_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:53 2005
         (293 letters)



>mm_chr6_67186209_67186901
          Length = 693

 Score =  538 bits (278), Expect = e-157
 Identities = 292/300 (97%), Gaps = 7/300 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacaaaccctgtctcg------aaaaaaaaaaaaaaaacag-aaaaaaaaacaacaa 53
           |||||||||||||||||||      ||||||||||||||||||| |||||||||||||||
Sbjct: 194 caggacaaaccctgtctcggaaaaaaaaaaaaaaaaaaaaacagaaaaaaaaaacaacaa 253

                                                                       
Query: 54  acaaacaaaaaaatgtttgagtctttccaactttttaatacttgtaaatgttttaatctt 113
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 acaaacaaaataatgtttgagtctttccaactttttaatacttgtaaatgttttaatctt 313

                                                                       
Query: 114 ccctacccagtaaaacttttgtatcctcaaaggcccactgctctctagtctagaaaattg 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ccctacccagtaaaacttttgtatcctcaaaggcccactgctctctagtctagaaaattg 373

                                                                       
Query: 174 ttggcttggtacagttgtccttttctccttgaaacagagaccccttgctgttatttacat 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttggcttggtacagttgtccttttctccttgaaacagagaccccttgctgttatttacat 433

                                                                       
Query: 234 ttcttaggcacaagttcttttcagagtagtcaattaaataagactgtgaggaccccagcc 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttcttaggcacaagttcttttcagagtagtcaattaaataagactgtgaggaccccagcc 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)