Query= MSMg01no075_f21.b1 MSMg01no075_f21.b1 CHROMAT_FILE:
MSMg01no075_f21.b1 PHD_FILE: MSMg01no075_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:01 2005
(603 letters)
>mm_chr6_75586658_75587660
Length = 1003
Score = 990 bits (512), Expect = 0.0
Identities = 572/598 (95%), Gaps = 13/598 (2%)
Strand = Plus / Minus
Query: 7 attccaagacttcccatgatgtctcaaaaacaagaccagtaaggtaaatttgaaaaaatg 66
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 717 attccaagacttcctatgatgtctcaaaaacaagaccagtaaggtaaatttg-aaaaatg 659
Query: 67 gtggtgaagaactacttttgttaaacttgtagtaactaagtaactaagttaagtattata 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 658 gtggtgaagaactacttttgttaaacttgtagtaactaagtaactaaattaagtattata 599
Query: 127 taacttaatccccctctgttaggctacaggtatagcctaagccaaccctgtttaagtctc 186
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 598 taacttaacccccctctgttaggctacaggtatagcctaagccagccctgtttaggtctc 539
Query: 187 agaattagcagggaagtattgaggaaaaaaaa-ttttttgtgaagttcttttcaacacct 245
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 538 agaattagcagggaagtattgaagaaaaaaaatttttttgtgaagttcttttcaacacct 479
Query: 246 ttgcttcaaaatctcttgcatccatcaaagctagttcaaacccaagtatgaaactaggaa 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ttgcttcaaaatctcttgcatccatcaaagctagttcaaacccaagtatgaaactaggaa 419
Query: 306 taagatgcaactctgaggatagaaatgtacaactatgttgtcatttaacttctctggcac 365
||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||
Sbjct: 418 taagatgcaactctgaggacagaaatgtacaactatgttgccattaaacttctctggcac 359
Query: 366 agcctctatgcagatctttattttactctcttctgggattgcttttcaggaataatatgg 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 agcctctatgcagatctttattttactctcttctgggattgcttttcaggaataatatgg 299
Query: 426 actccctctggtgacaaattcatacctcgacattcccctagcacttaattaaaaagctgt 485
|||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||
Sbjct: 298 actccctctggtgacaaattcatacctcaacattcccctggcagttaattaaaaagctgt 239
Query: 486 attctccaggtcttgtacttgtggtgtgcagaaaaggatgtgagatggtaggcttccatg 545
||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 238 attctccaggtcttgtacttgtggtgtgcag---agg--------tggtaggcttccatg 190
Query: 546 aaaagttttctatgttttctattatttaatgtcttttttcttttttataagggaacac 603
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 aaaagttttctaagttttctattatttaatgtcttttttcttttttataagggaacac 132
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no075_f21.g1 MSMg01no075_f21.g1 CHROMAT_FILE:
MSMg01no075_f21.g1 PHD_FILE: MSMg01no075_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:01 2005
(605 letters)
>mm_chr6_75453823_75454831
Length = 1009
Score = 1147 bits (593), Expect = 0.0
Identities = 604/609 (99%), Gaps = 4/609 (0%)
Strand = Plus / Plus
Query: 1 agtattataattattacaattgcagttttattcttcttgtctatttctttgggactaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtattataattattacaattgcagttttattcttcttgtctatttctttgggactaaga 260
Query: 61 gaaaaatcaattcaaaaaaaaaaaa---tccaccctgaacgactttctgtagcaagtagg 117
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaaatcaattcaaaaaaaaaaaaaaatccaccctgaacgactttctgtagcaagtagg 320
Query: 118 aatgtgctctttaagaaaataaaatgcaaaatgaaagcttcattccaggtgaaaaataac 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgtgctctttaagaaaataaaatgcaaaatgaaagcttcattccaggtgaaaaataac 380
Query: 178 cacttggttttttt-ggtttttattctgtctctcaatgtgtttttcttaattggagtgac 236
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacttggttttttttggtttttattctgtctctcaatgtgtttttcttaattggagtgac 440
Query: 237 atagaatctcagtataaaatttttgacgccagcaccacatctcacatctattgattttct 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atagaatctcagtataaaatttttgacgccagcaccacatctcacatctattgattttct 500
Query: 297 attctttacaaagttgtaacagctactacatttacattaataaggcttatcttagattaa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attctttacaaagttgtaacagctactacatttacattaataaggcttatcttagattaa 560
Query: 357 atattggatcatgtttcacccccaaatttgtatcagtcaaaatagattgccgaggttaaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atattggatcatgtttcacccccaaatttgtatcagtcaaaatagattgccgaggttaaa 620
Query: 417 aagtcataaaaataaaaagcaagcaagcaatcctcccaagatagtttaaagcaattaggg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagtcataaaaataaaaagcaagcaagcaatcctcccaagatagtttaaagcaattaggg 680
Query: 477 gggaaatgggaaatcaaagaaaaaaaaaataactagggtaatggggaggcagatccatca 536
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 681 gggaaatgggaaatcaaagaaaaaaaaaataactagggtgatggggaggcagatccatca 740
Query: 537 atgaagtgattaccatgtaaacacagggttctgggttctactatcaacacatactttaaa 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgaagtgattaccatgtaaacacagggttctgggttctactatcaacacatactttaaa 800
Query: 597 agccaggct 605
|||||||||
Sbjct: 801 agccaggct 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1009
Length adjustment: 10
Effective length of query: 595
Effective length of database: 999
Effective search space: 594405
Effective search space used: 594405
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
