BAC Information

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BAC

Clone NameMSMg01-075M12
Chromosome6 (Build37)
Map Location 35,151,165 - 35,151,395
singlet/doubletsinglet
Overlap geneNup205
Upstream geneAkr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4
Downstream gene1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312, LOC100039327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075M12.T7 (MSMg01no075_m12.b1)MSMg01-075M12.TJ (MSMg01no075_m12.g1)
ACCAG298516AG298517
length713702
length of high quality
(start - end)
232 (76 - 307)347 (78 - 424)
definitionCHROMAT_FILE: MSMg01no075_m12.b1 PHD_FILE: MSMg01no075_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:32 2005CHROMAT_FILE: MSMg01no075_m12.g1 PHD_FILE: MSMg01no075_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGACGATCCGCG
GAATTCCAAGTTGATCCTACAATGAAATGAACTGCTCAGGTTGACATTTG
TCTGGAATATAGAACTGGATTTTCTAGGATTTTTCTAATTATGTTTGATG
TTGTTATGCTGTAAAAATACTAAACTTAACTATAATGTCTTATTGAAATA
AAATAACGTAATCCTTGATAAAATATTTCTGTAAAGTGATTTTTTAAAGA
AGTTTTTTTTTTTTTTTTAAAGATTTAAAAAATAAAATGTGCGAATACAC
TGTTGCTGTCTTCAGACATCTTTTTACGAGGGCATCAGATCTCATTACAG
ATGGTTGTGATTCACCACGTGCTTGCTGCCAACTGAACTCAGGACTTCCG
AAAGAGCATTCCGTGTTCCCCCCCGCTAAGCTATCTCCCCAACTCCCCAA
AACCTTATTCTGCTGACTCATTCTTGAACTAAATATATTTTACCCCATTC
CCACTAGTCCCTCCCACAAAGCACTTAATACGGTCTTTGACTTTCCGTAC
CCCCACCACTTTTCCTTACCCTGTTCGTAACACCTCCCGTTTCTTGCTCT
TTTTTATCCCCCCCATTTCTCTCTTCCTTTCCTCCGACCCCACCTTTTTT
ACCTTACCTCCCCCTTTTTCCCCCCATTTTTTCTCTCCTTCCCTCCACTC
CCTCAATTTTTAT
NAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAGAACGTGGGCTCACAAGA
TCTAGCTCTGCAGCTACCAGATCAAGTTGATCCAGCCAAGACCATCACTT
AAAAGAAGTTGGGGGGGGGTCTTTTTCGTCTTGTTCCAAATCTGTCCTTT
CTGAATATGAAAATGAAAAAAAGAAAGGCTAAATCGCCGGGCGTAGTGGC
GCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGA
GTTCGAGGCCAGCCTGGTCTACTTTGTGAATTCCAGGACAGCCAGAACTA
TACAGAGAAACCCTGTCTCGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAAAGACCCACACAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGAAAG
GAAGAAAGGAAGAAAGGAAGAAAGAAAGAAAGAAAGAAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGATAGAAAGAAAGAAAGAAAGGCTAGATCATTTCTCCAAATGAAAT
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_m12.b1 MSMg01no075_m12.b1 CHROMAT_FILE:
MSMg01no075_m12.b1 PHD_FILE: MSMg01no075_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:32 2005
         (232 letters)



>mm_chr6_35150965_35151596
          Length = 632

 Score =  433 bits (224), Expect = e-126
 Identities = 230/232 (99%), Gaps = 1/232 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgaactgctcaggttgacatttgtctggaatatagaactggattttctaggatttttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgaactgctcaggttgacatttgtctggaatatagaactggattttctaggatttttc 260

                                                                       
Query: 61  taattatgtttgatgttgttatgctgtaaaaatactaaacttaactataatgtcttattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taattatgtttgatgttgttatgctgtaaaaatactaaacttaactataatgtcttattg 320

                                                                       
Query: 121 aaataaaataacgtaatccttgataaaatatttctgtaaagtgattttttaaagaagttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaataaaataacgtaatccttgataaaatatttctgtaaagtgattttttaaagaagttt 380

                                                               
Query: 181 tttttttttttttaaagatttaaaaaataaaatgtgcgaatacactgttgct 232
           |||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 tttttttttttt-aaagatttaaaaaataaaatgtgtgaatacactgttgct 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)