BAC Information

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BAC

Clone NameMSMg01-075M24
Chromosome6 (Build37)
Map Location 52,725,779 - 52,725,942
singlet/doubletsinglet
Overlap geneJazf1
Upstream geneSkap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841, Hibadh, Tax1bp1
Downstream geneLOC666259, LOC666516, D430007I03, Creb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075M24.T7 (MSMg01no075_m24.b1)MSMg01-075M24.TJ (MSMg01no075_m24.g1)
ACCAG298540AG298541
length776751
length of high quality
(start - end)
164 (78 - 241)242 (74 - 315)
definitionCHROMAT_FILE: MSMg01no075_m24.b1 PHD_FILE: MSMg01no075_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:34 2005CHROMAT_FILE: MSMg01no075_m24.g1 PHD_FILE: MSMg01no075_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCACAACCCGCGGAATTC
TCTCAGGACTGCTCTGCTGCTCTACAGCCACAGGGCAGCTCAGCATCTTG
CTGGGAGGAGTGGCTAGGGGTTTCTCTGTGCTATGTCACCTGGCATTCTG
AATCAGTAAGGGACACAGTTCCCTCACAGCCACTAGAGCCATCCGCTACT
CAGTTCCTGCAGCACAGGGTCACTAAGTTTGCTCTTGGCCTTAACAGGAG
AGAGCATTCAAAGCCCATGTGAACCCAGGCTTCGATAGAGGAAGAGGTTG
CTAGAGACTCTTCCACGAATTTTGTTGGGGCAAAATGTGAAGGGTGGAGC
TTGTCACACTTTCTCTCTTTTCTCTCCCCCCCCTCCTCCCCCCCATTCCT
TTATATCTCCCCTTCCCTTCTCCCCCCCTTTTTTAGACCTCTTTCCCACC
CCCTCCTTTCTCCTCTCCCCCACTCCCCTTTCCTCCCTACCTCCATCCCC
CGCACATATCCCCACTCTACTCCCCTCTTTCCCTCCTTCCCCCTAGCTCC
CCCTCTCATTCTGCTCATTCCCACTTCAACTCANCCCCCCCTTTCTCCCC
CCCTCTTCCTCCTCCCCCCTTCCCTCTTACCCCCCCACTTAATCCCCTTG
CTCTTTATCTTCCCACCCCCTCCTCTCTCCCTACTCCTTCTTCCCCACCC
TCTTTATTCCTCTCTCCTCCCCCCCACACCCTCCCTCTTTTTCTCCTACT
ACCCCTCTCCCTCCCCCTTTTCTTTG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAATATTGTTATTAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGTTTATATCCAGAAGATGCCCCAACTGGCAATAAG
GACACATGCTCCACTATGTTCACACCCCCCTTATTTATAATAGCCAGAAG
CTGGTATGATACCATATGCCCCTCCACATAGCAATGGATTCTTAATCTGT
GGTCACTCCCCACAATGCAGTACTACTTCAGCTACTTATAATATTGAATT
TATCACATTCCTCATCCCCATCGACACGTATCTGTAGCGCCACCACCCTG
CACTCTCTTTACTTTCCTTTCCCCTACTGTACCTCCCTCCCCCCTTTCTA
CCCCCTCCCACCCCCCACATTTCTCCCCCTTCTCTACTTCCTACTCCCCC
CCTACTTATCCTCACACCCTTCCATCCTCTTATCTCACCCCTCTCTCTTT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_m24.b1 MSMg01no075_m24.b1 CHROMAT_FILE:
MSMg01no075_m24.b1 PHD_FILE: MSMg01no075_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:34 2005
         (164 letters)



>mm_chr6_52725579_52726142
          Length = 564

 Score =  310 bits (160), Expect = 4e-89
 Identities = 163/164 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccacagggcagctcagcatcttgctgggaggagtggctaggggtttctctgtgctatgtc 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 ccacagggcagctcagcatcttgctgggaggagtggctaggggtgtctctgtgctatgtc 260

                                                                       
Query: 61  acctggcattctgaatcagtaagggacacagttccctcacagccactagagccatccgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctggcattctgaatcagtaagggacacagttccctcacagccactagagccatccgct 320

                                                       
Query: 121 actcagttcctgcagcacagggtcactaagtttgctcttggcct 164
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actcagttcctgcagcacagggtcactaagtttgctcttggcct 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)